AMCG00013576


Basic Information

Item Value
gene id AMCG00013576
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 36806758 ~ 36810451 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013576
GCTGACTGAAGGAGAAGCAGTCCATACCACAGCTACACAACCGCGCCAGGACTAAACGGACCATTGGTGAGGATTTATAAGcgatacaacaacaaaaacaaacaaacaacgaTTTGTCCATGGAAGTACCGAAATACCTTTGCAATTTATCCAACATGGAGAATTAATATCAGGAAAAAGGGAATGGACTTTGGCGGAACgcaaacatttattcatttatctaTGGTTATTTCAATCTGTTTCAAcgtatactttattttttattttttggaaacagTATAGCCttttattaatcaataatttCTTACCTGCTGAGATTTATACTTTTACGGGACTCTGAAAACTGAGTTTAATCTACACAGGAACTTCAACAATTAAATACCTTAATTCATCTGGAGGCAAActacttgattttttttgtttggtttttttttttacaaaaaggacatttttattgGGGATGTTGGGTTCAGTGAAAATGGAATCCCACGAAATTCCAGAATGGAATTCATTCTACAGCGAAGCCAATGATATGTACCCCTCAGCCAGCACAATGAACTCAGGTCTCGGATCCATGAACACCATCAACAGCTACATCAACCTGAACCCTGTGGGTTCCTCTGCTGCCATGAACATGGGCTACCCCAGTAGCGGGCTCAATGGTAGCCCTTTGGCAGGGATGGGCAGCGGGGCAAACCACATGAGTCTGTCCCCAAAGCGCTTCAAGATTGAGGACAAGGCCAACAAGAAGAACGCATCCAAGTCCCAGGAGGGAGGCAAAGGAGGCCACCAGGATGGCCTGCAAGAGGAGCACAGCCCCAACCCAGGCTCTGAAGGGGCTGAGTCAGCCCACTCTGACAGCTCCCACCATGGTTCCTCCTctgaggagcagcagcagcagcgaaaTCTACTTCAGCTCGACTGTCCCCCTCAGCCACCCGTTCAAGGCTCTCCATCCATATCTTCTGCCCCATCTGCCACCACTTCCAGCCACCCTCTCTCCCAGCCACTCGGGGGGAACCACCTACTACCCAGCTCCATCCAACACCTGGACCTGCAGAACGACCCCCTCAAGTCCATGGATCCCCACTACAACTTCAACCACCCTTTCTCCATCACTAACCTGATGTCCTCAGAGCAAAAGATGGACCTGAAGTCCTACCAGGATCAAGTGATGGCTTACAATAACTATGCAGTGTCCTCCCCCGTGGCCACCAAGCACAGTTACGAGAGCTCCACTTCTTCGGCTATTGACACAGGATCATATTACCAAACCCTATACAGCCGTTCAGTTCTCAATGCTTCGTAG

Function

GO: NA

KEGG:

id description
ko00340 Histidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013576 True 1309 mRNA 0.47 3 36806758 36810451

Neighbor

gene id symbol gene type direction distance location
AMCG00013574 irf2bp1,irf2bpl,LOC106580746,LOC108443036,LOC106612697 coding upstream 8782 36794041 ~ 36797976 (+)
AMCG00013570 NA coding upstream 93789 36709375 ~ 36712969 (+)
AMCG00013573 LOC107548551 coding upstream 113617 36692152 ~ 36693141 (+)
AMCG00013567 NA coding upstream 330366 36462852 ~ 36476392 (+)
AMCG00013568 NA coding upstream 362028 36434886 ~ 36444730 (+)
AMCG00013575 NA coding downstream 33077 36843528 ~ 36860797 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding downstream 166821 36977272 ~ 37013396 (+)
AMCG00013582 NA coding downstream 208000 37018451 ~ 37034474 (+)
AMCG00013581 NA coding downstream 237482 37047933 ~ 37056776 (+)
AMCG00013584 NA coding downstream 261063 37071514 ~ 37074315 (+)
G45408 NA non-coding upstream 23138 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 76802 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 86769 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 101865 36704652 ~ 36704893 (+)
G45395 NA non-coding upstream 106695 36698798 ~ 36700063 (+)
G45499 NA non-coding downstream 253506 37063957 ~ 37064264 (+)
G45538 NA non-coding downstream 440750 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 1065932 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 1262804 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 1287539 38097990 ~ 38098531 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 68279 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 160692 36620402 ~ 36646066 (+)
G45338 NA other upstream 402857 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 436671 36338262 ~ 36370087 (+)
AMCG00013560 sptbn4,LOC107602096,LOC103155361 other upstream 720915 36060755 ~ 36085843 (+)
G45439 NA other downstream 64456 36874907 ~ 36877603 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other downstream 301317 37111768 ~ 37122611 (+)
AMCG00013595 NA other downstream 504762 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 994756 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 1007920 37818371 ~ 37821575 (+)

Expression


Co-expression Network