AMCG00013586


Basic Information

Item Value
gene id AMCG00013586
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37129018 ~ 37133189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013586
ATGTCTTCGTTCAACCACAATGCGGAGGCTCAGCATACGGGCATGCTGCGCTTCAAGAAGAGGAAATCCCGCTTCTCCTACCGGGAAATTCAGATACTGCTGGAGGAAGTACGCAAGAACCGAAACATTGTCATAGGCAAGTGCCTCTCTGCTTCCCTGTGCAAGTTCAATAGGGGCGTGTCGACAGAGGTGAAGAAGCGCACGTGGGCAGAAATCACGGCCCGCATCAATGAAGTCAGCCTGTGTCCCCGTGAGATCATCGAAGTCATCAAGAAGTGGTCGGACCTCAAATGTGACACAAAGCGGAAGGTGGCAGCCATGCGGGCCGGGGGGCtggggaggggcgggggggggcggTCGCGGCTCTCCAGGGACCTGACGCCGGTGGAGAGCGTGGTGCACCAGATCCTGCAGCTCGCCAGCATCCGTaacctgcccccccaccctgacGATGGCCCCTACCCGGACCTGGGCAACCGGATCGGGCAGCAGGACGGACGGGGCCCTGGGAGAGGAGTGGTGGACGTGgacgaggaggacgaggaggaggaagaggtggaggacgaggaggacgaAGACATGACAGGGATGCCCTCTTCATCTGTGTCCTGCTCCCCCATCAGCAGGCTAGAGGGCTGTGCCCCAAGCCTCCCTCTGTCCTCCCACGCTCTCCCAATCTCCATGTCTATGTCGGTGTCTCACAAGCAGGAGCTGGGGGATCCTACACCTGTATACTGCATTGCTCCCCACCAGGACGTGGAGTCGTTGGAGTCGGAAGAGGAACGCCGAGCCCATTTCCTCTCAGCTGCCACCACGGCCCGTCTCCAGCCTGCCGCCCCTCTGTCCCAGGTTGAGGAGGACTCCCTCCTGGGTGGGGGGCTTCGTAGGGGCGGAGGGGGCTCAACGGCCCCCACCAGCCCCCTGATGGCCTCTCGGAATTCCTTGAGCGTGCGAGAGAAGATGGTGCACAATGCCACGCTGAGCATCCGCGAGCAGCGCACCACCAACGAGCTGCTGGAGACGGTGTCACGCTCGCTAGAGCTGCTGTCCGAGTCCATGCAGCAGATGGTGGAGACCCAGCAAGACTTTGTGCGGGACTCGTTGCAGATGCAGAGGGAAACAGTCCAGGTGCTGCGCGAGTTCACCGCTGGGGCCCTGGCTCTCATGCACGACAAACTGAACGGCCACCCCCCTGCGCCAACCTAGAACTGTGGTCTGTCCTGGGCACGCTGTGACCGCGAGCACCGGAAGGCCACAAAGTGGACTGCATGACAGAGGTTGCAGAGAGGACAGAGGATTTGTGGTTGCGGCTGTAAGTCGAAGTTGCCACACTTCTCTTCCCAGCTTCTCTCCGCTACGTCTGAGTTCTAACCGGGGAGCCTTAGTTATGGACAAGGAGTTTTAATGGACTCTCCCCCCACCTCGTATGCGATTGGATTTTAGCCAAGCCGGAGCTTAGTTTTATTAAGCATATCAGGAACATGATATGAGCCCATGAGGAGGGCAGTTAATTTCCTCTTTTTACagtgaatgaaaaagaaatacaacaatgaaaaacaaaaacaaaccaaaagagTTCTTCCTGAACGATCTCCACTTCTTGTCCACCTAAACCATTGTCTGACTGCTGCCTGTACACAAATCCAGCTGTTACCTACAAATCCCGGTGCTCTTGGAAGAATtccaaacagtattttttttgtacaactTGGGCCTGTATTCATAAGGGTGTTGAGTGTGACCATTGTTAAGTGTGtggtggaaaacaaaaactactcAAAATGTCCAAACCTAATACTGGAGTACCACCAATTAGAGACCTTTATTCTGGTGAATCCAATATCTGTCTGACCTTGCAAGCTTTTGTGGAATTAATTAGTTTATAAAAGCAGTAGGTGACACTTCTccacttttttgtgtttgtgtttttcttgcttAGGAAAAACGGGTGTTAACCTAGTGCTACAGTAACcgttttatgaatatggctCACTATAGTTGTGCAGAAAGCTACACAAAATGCTTCTGGTGTGatgacaatatattttgtatagaaTTGCAACACGTTACTTTTAAGAGTTTCAATTAATGCAAACCACGTCCATAAATGTATGTACCTTGACGCTTGACAAATaacagtataatttaaataataacacaaatagtttattttgtggtCCGTACTGACCTTATTTTAGACAACAAGTCCCTAGCTTTAACCCAAAACAGCCATTTATAATCAGAGGAGGCTGTGTGGACAGGAACTGTGATAGGATTTAACTCACTGGGACACTCATAGAGGTGCtgtatgttgttattataaCCCCGAATTAATGCAATCCTGAAGGATTCACAGGGTGAATTGATTTTCACAACAGTTGTTTTAGTAATTGCCTAACGTGATTAATTTAAACTTGTTCCCACCTCTTTACAGAACAGTGCCCATCCAAGAAGTGTGGCTTGAAACATCtgctttaatgttttcaaaaaggGTGCttgttattactattgttactattattgtatatatattattgtccAAAGCTATGATCTCAGAGCACCTTTGCGgtgataacattttatttttctaccaaGAATAAAAACTTTCGGACCACAGCAGCGGAGGGCCGAAGTATTCCTGCCATAGACTAGAAACAGGGAATGTTACATTACGCCGCATGTAATATCCCacctattttcttttctttttggacCTTGCCTTAAATGTATCACTAATATGCTTCTATAGCATtaacaacattcacaaatttTGAGGAATTGGAAATCAGTTCGGTTACCTctttgattttatataattagatttatttatgtatttatttgtatttagtccGTTACATTAATGAACTAAAATCTCAGCGTACTACTACTTGCTCGGTTACCTCGCACAGTCTAGTGTAATAAGGGcagctgactttttttttaaatgaattttcCAAGGAACCACAAAACTGTTTATTGTCAGAACAACTTTGATTATTCATGGAgaatttcaactttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013586 True 3031 mRNA 0.48 4 37129018 37133189

Neighbor

gene id symbol gene type direction distance location
AMCG00013589 capns1,LOC102233422,LOC105011036,LOC105909712 coding upstream 23038 37101686 ~ 37105980 (+)
AMCG00013584 NA coding upstream 54703 37071514 ~ 37074315 (+)
AMCG00013581 NA coding upstream 72242 37047933 ~ 37056776 (+)
AMCG00013582 NA coding upstream 94544 37018451 ~ 37034474 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding upstream 115622 36977272 ~ 37013396 (+)
AMCG00013588 ckma,LOC101077669,LOC103045415,LOC103141037 coding downstream 21078 37154267 ~ 37170647 (+)
AMCG00013593 NA coding downstream 93467 37226656 ~ 37228647 (+)
AMCG00013598 NA coding downstream 220093 37353282 ~ 37393858 (+)
AMCG00013600 NA coding downstream 273102 37406291 ~ 37411449 (+)
AMCG00013601 supt5h,LOC107662786,LOC107597543,LOC107657557,LOC107586261 coding downstream 278477 37411666 ~ 37486810 (+)
G45499 NA non-coding upstream 64754 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 345398 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 399062 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 409029 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 424125 36704652 ~ 36704893 (+)
G45538 NA non-coding downstream 118012 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 743194 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 940066 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 964801 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 1077901 38211090 ~ 38212886 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 6407 37111768 ~ 37122611 (+)
G45439 NA other upstream 251415 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 390539 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 482952 36620402 ~ 36646066 (+)
G45338 NA other upstream 725117 36403354 ~ 36403901 (+)
AMCG00013595 NA other downstream 182024 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 672018 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 685182 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 921708 38054897 ~ 38069645 (+)
G45850 NA other downstream 1097377 38230566 ~ 38231330 (+)

Expression


Co-expression Network