AMCG00013587 (zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580)


Basic Information

Item Value
gene id AMCG00013587
gene name zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37111768 ~ 37122611 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013587
gggCCAAGACAGCTGCATGCTGAAGCTCTTGAGCTTCCCACAGCCTTCATCGTGTTGGGCTGGTTGGACAAGAAACAGACAGGCAAGATGGCTGCAGACACAGTGATGCAGACTGAGATGGAGGAGCTGCAGAGACGAGCCAATCAAATCACAGACGAGtCTCTTGAAAGCACTCGCCGCATGCAGCTACTGGTTGAAGAGAGCAAGGATGCTGGCATTCGAACTTTGGTCATGCTGGATGAACAAGGAGAACAACTGGATCGCATTGAGGAAGGCATGGATCAGATCAACCAAGACATGAAGGAAGCAGAGAAAAACCTCACTGACATGGCCAAATGCTgcggtctgtgtGTACACCTGGCCGCACATGGCTCCACAAACGCCAAGCCAGTGGGCACTTCCTGTCACCCGGGCCAGCcaatcagacagacagacaaacagacaaacaTCAGAGACCTCTATTGTGtatctccccccctcctccccactcCCCTTTGCCCTCCACCCTCCATCCCTCCTTGTCCAGAACAACTGGAACGCATTGAAGAAGGTTTGGATCAGATCAATCAGAACATGAAGGAAGCTGAGAAAAACCTCACTGATTTGGGCAAATGCTGTGGTCTGTGTTCCTGTGAGAAGCTGAAGAATATAGAAACCACTGGTGCGTACAAGAAGGTGTGGGGCAACAACCAGGACGGAGTGGTGTCCAGTCAGCCCTCCTCACGAGTGATGGATGAAAGGGAGAGGATGACCATGAGTGGTGGACATATCCGCAGGGTAACCAATGATGCCCGTGAGGATGAGATGGAGGAGAACTTACAGCAGGTGGGCAGCATCCTGGGCAACCTCCGCAGCATGGCGCTGGACATGGGCAACGAGATCGACATGCAAAACACGCAGATAGACCGGATCATGGACAAG
>TU56708
GCTGAAGCTCTTGAGCTTCCCACAGCCTTCATCGTGTTGGGCAAGATGGCTGCAGACACAGTGATGCAGACTGAGATGGAGGAGCTGCAGAGACGAGCCAATCAAATCACAGACGAGtCTCTTGAAAGCACTCGCCGCATGCAGCTACTGGTTGAAGAGAGCAAGGATGCTGGCATTCGAACTTTGGTCATGCTGGATGAACAAGGAGAACAACTGGAACGCATTGAAGAAGGTTTGGATCAGATCAATCAGAACATGAAGGAAGCTGAGAAAAACCTCACTGATTTGGGCAAAT

Function

symbol description
zgc:101731 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be located in neuron projection and synapse. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Is expressed in habenula; olfactory placode; otic placode; and peripheral olfactory organ.

NR:

description
synaptosomal-associated protein 25 isoform X2

GO:

id name namespace
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013587 True 921 mRNA 0.53 11 37111768 37122611
TU56708 False 295 TUCP 0.49 5 37113502 37120571

Neighbor

gene id symbol gene type direction distance location
AMCG00013589 capns1,LOC102233422,LOC105011036,LOC105909712 coding upstream 5788 37101686 ~ 37105980 (+)
AMCG00013584 NA coding upstream 37453 37071514 ~ 37074315 (+)
AMCG00013581 NA coding upstream 54992 37047933 ~ 37056776 (+)
AMCG00013582 NA coding upstream 77294 37018451 ~ 37034474 (+)
AMCG00013583 clip3,LOC106612689,LOC106580752 coding upstream 98372 36977272 ~ 37013396 (+)
AMCG00013586 NA coding downstream 6407 37129018 ~ 37133189 (+)
AMCG00013588 ckma,LOC101077669,LOC103045415,LOC103141037 coding downstream 31656 37154267 ~ 37170647 (+)
AMCG00013593 NA coding downstream 104045 37226656 ~ 37228647 (+)
AMCG00013598 NA coding downstream 230671 37353282 ~ 37393858 (+)
AMCG00013600 NA coding downstream 283680 37406291 ~ 37411449 (+)
G45499 NA non-coding upstream 47504 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 328148 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 381812 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 391779 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 406875 36704652 ~ 36704893 (+)
G45538 NA non-coding downstream 128590 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 753772 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 950644 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 975379 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 1088479 38211090 ~ 38212886 (+)
G45439 NA other upstream 234165 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 373289 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 465702 36620402 ~ 36646066 (+)
G45338 NA other upstream 707867 36403354 ~ 36403901 (+)
AMCG00013566 NA other upstream 741681 36338262 ~ 36370087 (+)
AMCG00013595 NA other downstream 192602 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 682596 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 695760 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 932286 38054897 ~ 38069645 (+)
G45850 NA other downstream 1107955 38230566 ~ 38231330 (+)

Expression


Co-expression Network