AMCG00013588 (ckma,LOC101077669,LOC103045415,LOC103141037)


Basic Information

Item Value
gene id AMCG00013588
gene name ckma,LOC101077669,LOC103045415,LOC103141037
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37154267 ~ 37170647 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013588
atgtgtgtgtgtgctctgagGGAGTCCAGGCCGTATAAGGGCAGTGTCATCCTGGCAGAGAACTCTAGGCAGGACAAGTGTATCAGAAGAGCAGCCATGCCTTTCGGAAACACCCACAACAACTACAAGCTCAACTTCTCAGTTGATGAGGAGTACCCCGACCTGACTAAGCACAACAACCACATGGCAAAGGCCCTCACCAAGGATATCTATGCCAAGTTGAGAGACAAGCAGACCCCCAGCGGCTTCACCCTGGATGACTGCATCCAGACCGGAGTGGACAACCCTGGCCACCCTTTCATCATGACTGTGGGCTGCGTGGCTGGAGATGAAGAGACCTATGAAGTGTTCAAGGATCTCTTTGACCCAATCATTGAGGACCGTCACAATGGCTACAAGGCCACAGACAAGCACAAGACTGACTTGAACTTTGAGAACCTGAAGGGAGGTGATGACCTTGACCCCAAATACGTTCTGAGCAGCCGTGTGCGTACCGGACGCAGCATCAAGGGCCTGACCCTGCCCCCCCACTGCAGCCGCGGCGAGCGCAGAATGATTGAGAAACTGTCCGTCGAGGCTCTGACCAGCCTGGATGGAGAGTTCAAGGGCAAGTACTACCCCCTGAAGGACATGTCTGACCAGGAACAGCAGCAACTGATTGATGACCACTTCCTGTTTGACAAGCCTGTGTCCCCCCTGCTGTTGGCCTCTGGTATGGCTCGTGACTGGCCCGACGCAAGAGGAATCTGGCACAATGAGGGAAAGACCTTCCTGGTGTGGGTGAATGAGGAAGACCATCTCCGCGTCATTTCCATGCAGCAGGGTGGCAACATGAGGGAGGTCTTCAGACGCTTCTGCGTTGGTCTGCAGAAGATTGAGCATGTCTTCAAGAAGCACAACAAGGCTTTCATGTGGAACGAGCATCTCGGCTACGTCCTAACCTGCCCCTCTAACCTGGGCACGGGTCTGCGTGGTGGCGTGCATGTCAAACTTCCCAACCTGAGCAAGCATGCCAAGTTCGAGGAGATCCTCACCAGGCTGCGCCTGCAGAAGCGTGGCACAGGTGGTGTGGACACTGCCGCTGAGGGTGGAGTCTTTGACATCTCCAACGCTGATCGCCTAGGCTTCTCCGAGGTTGAGCAGGTCCAGATGGTGGTCGATGGTGTGAAGCTCATGATTGAAATGGAGAAGAAACTGGAGAAGGGAACCGCCATCGATGACATGATGCCCGCCCAGAAGTAGAGTGGGAACAGTGCACTTTTTATATTGTGACATACCATCAAAGAAATCAGCAAGAAAAAACATGGATCGGACAGCTTTAGGGACTTTAAGCTCCCCTCtgcttttgtctttctctcttttctacACTGCTGTCATTTTTTCCTACTCAGCCTTCCCTCCtaccttccttccttccttcctttcttccttcctGTCTTCCCTCTCCGTCCCTCTTCTCTTTTCATCTGTTTGGGTAACATCCTGGGATCAAACCTTCGCACAGACGGGTGCCACCCCTTGTGCCCGTTGGTTGTGACTTCACAGAAATTTTTTgctaaattgttttttttttttttttggttgtaaaaagtaagcaaataatgttataaaaaa

Function

symbol description
ckma Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in brain; cardiovascular system; eye; and musculature system. Orthologous to human CKM (creatine kinase, M-type).

NR:

description
PREDICTED: creatine kinase M-type

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00933 E2.7.3.2; creatine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013588 True 1614 mRNA 0.52 8 37154267 37170647

Neighbor

gene id symbol gene type direction distance location
AMCG00013586 NA coding upstream 21078 37129018 ~ 37133189 (+)
AMCG00013589 capns1,LOC102233422,LOC105011036,LOC105909712 coding upstream 48287 37101686 ~ 37105980 (+)
AMCG00013584 NA coding upstream 79952 37071514 ~ 37074315 (+)
AMCG00013581 NA coding upstream 97491 37047933 ~ 37056776 (+)
AMCG00013582 NA coding upstream 119793 37018451 ~ 37034474 (+)
AMCG00013593 NA coding downstream 56009 37226656 ~ 37228647 (+)
AMCG00013598 NA coding downstream 182635 37353282 ~ 37393858 (+)
AMCG00013600 NA coding downstream 235644 37406291 ~ 37411449 (+)
AMCG00013601 supt5h,LOC107662786,LOC107597543,LOC107657557,LOC107586261 coding downstream 241019 37411666 ~ 37486810 (+)
AMCG00013599 supt5h,LOC106580766 coding downstream 316541 37487188 ~ 37518978 (+)
G45499 NA non-coding upstream 90003 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 370647 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 424311 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 434278 36719652 ~ 36719989 (+)
G45397 NA non-coding upstream 449374 36704652 ~ 36704893 (+)
G45538 NA non-coding downstream 80554 37251201 ~ 37290765 (+)
G45737 NA non-coding downstream 705736 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 902608 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 927343 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 1040443 38211090 ~ 38212886 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 31656 37111768 ~ 37122611 (+)
G45439 NA other upstream 276664 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 415788 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 508201 36620402 ~ 36646066 (+)
G45338 NA other upstream 750366 36403354 ~ 36403901 (+)
AMCG00013595 NA other downstream 144566 37315213 ~ 37327711 (+)
AMCG00013616 ccdc9 other downstream 634560 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 647724 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 884250 38054897 ~ 38069645 (+)
G45850 NA other downstream 1059919 38230566 ~ 38231330 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031239 ckma coding NC_007116.7 CM002889.2 36832079 ~ 36837846 (-)
grasscarp (Ctenopharyngodon idella) CI01000072_03204448_03208684 CKM, CKMA, CKMB, CKM1, CKM2 coding CI01000072 null 3204448 ~ 3208945 (+)