AMCG00013599 (supt5h,LOC106580766)


Basic Information

Item Value
gene id AMCG00013599
gene name supt5h,LOC106580766
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37487188 ~ 37518978 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013599
ATGGGGCGGGGAAGAGGCAGAAGAGACAACGACCTGATTGGTCAGACAGTCCGCATATCACAGGGACCTTACAAGGGGTACATTGGGGTGGTCAAAGATGCCACGGAATCCACTGCCCGTGTGGAGCTACATTCCACCTGCCAGACTATCTCTGTGGACCGTCAGAGACTCACCACTGTGGGTGCAAGGAGACATGGAGGAATGACCTCAACTCATGGACGCACACCCATGTACGGCTCCCAGACTCCCATGTATGGGACTGGCTCCAGGACCCCGATGTACGGCTCTCAGACACCACTCCACGATGCTGGAAACCGTACCCCTCACTATGGTTCTCAGACCCCGCTGCATGATGGGAGTAGGACGCCAGGGCAAAGTGGAGCCTGGGACCCCAACAACCCCAACACCCCCTCAAGGGCGGACGAGGAGTACGAGTTTGGCTACGATGACGAGCCCTCCCCATCTCCGCAAGGTTACGGAGGCACCCCCAACCCACAGACCCCTGGCTACCCAGAAGTGCCCTCTCCGCAGGTCAACCCCCAGTACAACCCCCAGACACCAGGCACACCAGCCATGTACAACACAGACCAGTACTCTCCCTATGCGGCCCCATCTCCTCAAGGCTCCTACCAGCCCAGCCCAAGCCCCCAGAGCTATCATCAAGTCGCTCCCAGTCCAGTGGGCTACCAAAACACCCACTCCCCAGCCAGCTACCATCCCACGCCCTCACCCATGGCCTACCAGGCCAGTCCGAGCCCCAGCCCGGTAGGCTACAGCCCGATGACCCCGGGAGcaccctctcctggagggtacAACCCCCACACCCCCGGCTCCAGCATCGATCAGAGCTCCTGCGACTGGGTCACCACTGACATCCTGGTGCGTGTCAGGGACACCTTCCTGGACAGCCAGGTGGTCAACCAGACTGGGGTGATCCGCAGCGTCACGGGTGGAATGTGTTCGGTCTTCCTCCAAGACACGGAAAAAGTGGTCAGCATCTCCAGTGAACATCTGGAGCCAGTAACACCCACCAAGAATAACAAGGTGAAAGTGATCCTGGGAGAAGATCGGGAGGCCACGGGTGTCCTGCTGAGTATAGATGGGGAGGACGGTATTGTAAGAATGGAGCTGGACGAGCAGCTCAAAATCCTCAATCTTCGCTTCCTGGGCAAGCTAGAAGTGTGACCCGCTCTGTGTGACCCCACAGACAACTCACTCAGAAGTAACTAAATAAGGAAGAAATATTAAGAACATACTTTTCAGtgtgttagttttttgtttgtttgtttatttacccCTTCAGTTCCCTAACTCTAGAAAAGTGATCTGTAAGACTTTACAAAGGCGAAACaataaaaggaaaggaaaaaattaTGTATGGAGGACTTCATTCcaagttgttttttctcctttttttcctgGGGGGGGTGCAGGGACAGACACTTGCTGGAACCAAGTTGTGGGGTAGTAGCCTCCTGCTCTTGAATTGTGTAGTGTcactgattgttttgttttggccaTTAAAAAAAGTTCCACAACTCAATAAAGCCTGTCAAATGCA

Function

symbol description
supt5h Enables DNA binding activity. Acts upstream of or within several processes, including generation of neurons; regulation of signal transduction; and regulation of transcription elongation from RNA polymerase II promoter. Located in nucleus. Is expressed in brain and optic cup. Orthologous to human SUPT5H (SPT5 homolog, DSIF elongation factor subunit).

NR:

description
PREDICTED: transcription elongation factor SPT5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013599 True 1561 mRNA 0.54 9 37487188 37518978

Neighbor

gene id symbol gene type direction distance location
AMCG00013601 supt5h,LOC107662786,LOC107597543,LOC107657557,LOC107586261 coding upstream 378 37411666 ~ 37486810 (+)
AMCG00013600 NA coding upstream 75739 37406291 ~ 37411449 (+)
AMCG00013598 NA coding upstream 93330 37353282 ~ 37393858 (+)
AMCG00013593 NA coding upstream 258541 37226656 ~ 37228647 (+)
AMCG00013588 ckma,LOC101077669,LOC103045415,LOC103141037 coding upstream 316541 37154267 ~ 37170647 (+)
AMCG00013602 timm50 coding downstream 55372 37574350 ~ 37581432 (+)
AMCG00013604 NA coding downstream 76094 37595072 ~ 37602985 (+)
AMCG00013605 NA coding downstream 141419 37660397 ~ 37666944 (+)
AMCG00013606 NA coding downstream 152128 37671106 ~ 37675959 (+)
AMCG00013603 NA coding downstream 157730 37676708 ~ 37683789 (+)
G45538 NA non-coding upstream 196423 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 422924 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 703568 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 757232 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 767199 36719652 ~ 36719989 (+)
G45737 NA non-coding downstream 357405 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 554277 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 579012 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 692112 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 719561 38238539 ~ 38243152 (+)
AMCG00013595 NA other upstream 159477 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 364577 37111768 ~ 37122611 (+)
G45439 NA other upstream 609585 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 748709 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 841122 36620402 ~ 36646066 (+)
AMCG00013616 ccdc9 other downstream 286229 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 299393 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 535919 38054897 ~ 38069645 (+)
G45850 NA other downstream 711588 38230566 ~ 38231330 (+)
G45894 NA other downstream 851678 38370656 ~ 38373198 (+)

Expression


Co-expression Network