AMCG00013602 (timm50)


Basic Information

Item Value
gene id AMCG00013602
gene name timm50
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37574350 ~ 37581432 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013602
ATGATTATTGAGCCCACAAGTCCCAAGCTGCTCCCGGACCCCCTGAAGGAACCATACTACCAGCCCCCCTacaccctggtcctggagctCACCGATGTGCTGCTGCACCCCGAGTGGTCGCTGGTGACTGGCTGGCGCTTTAAGAAGAGGCCGGGCATTGACTTCTTGTTTCAGCAGCTGGCGCCTCTCTATGAGATTGTCATCTTCACCTCCGAAACTGGCTTGACAGCCTTCCCTCTCATTGACAGCATAGACCCGCAGGGCTTCGTCATGTATCGCCTATTCCGAGACGCCACGCGCTACGTGGAAGGACATCATATTAAGGATGTGTCCTGTCTCAATCGGGACACCTCCAAAGTGATCGTGGTGGACTGCAAGAAGGAGGCCTTCACCCTGCAGCCTTTCAACGGCCTGGCTCTGCAGAAGTGGGACGGCAACTCCGAGGACCGCACACTGTACGACTTGGCTGCGTTCCTGAAGACAATTGCCCTGAGTGGAGTGGATGACGTACGCACTGTGCTGGAAAACTACGCTCACGAGGACGACCCCATCGACGCCTTCAAACGCAGACAAGCTCAGCTTGCacagGAGGAGCAAAATCGACTATCAGAACTCTCTCAGCAGAAGCAGCAGGGGATCTCATTGAGCTCCATAACGAGCAGGTTTTGGTCCCGCTCGAAGCAACAGTGACCTCTGCTCTCAAATCCACCAATTGTAGTCCATCTTACCAGGCAGCCAGCCAATCGGAGACGGCGCTGCCGGCCCGTGACGGGCTGTGTGGCTGTGAGGTTGGGTTATTGTGGGGGGAG

Function

symbol description
timm50 Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Acts upstream of or within apoptotic process. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including immature eye; margin; midbrain; pectoral fin musculature; and segmental plate. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 9. Orthologous to human TIMM50 (translocase of inner mitochondrial membrane 50).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit TIM50

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0007006 mitochondrial membrane organization biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0015031 protein transport biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013602 True 809 mRNA 0.56 6 37574350 37581432

Neighbor

gene id symbol gene type direction distance location
AMCG00013599 supt5h,LOC106580766 coding upstream 55372 37487188 ~ 37518978 (+)
AMCG00013601 supt5h,LOC107662786,LOC107597543,LOC107657557,LOC107586261 coding upstream 87540 37411666 ~ 37486810 (+)
AMCG00013600 NA coding upstream 162901 37406291 ~ 37411449 (+)
AMCG00013598 NA coding upstream 180492 37353282 ~ 37393858 (+)
AMCG00013593 NA coding upstream 345703 37226656 ~ 37228647 (+)
AMCG00013604 NA coding downstream 13640 37595072 ~ 37602985 (+)
AMCG00013605 NA coding downstream 78965 37660397 ~ 37666944 (+)
AMCG00013606 NA coding downstream 89674 37671106 ~ 37675959 (+)
AMCG00013603 NA coding downstream 95276 37676708 ~ 37683789 (+)
AMCG00013612 NA coding downstream 132316 37713748 ~ 37714896 (+)
G45538 NA non-coding upstream 283585 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 510086 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 790730 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 844394 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 854361 36719652 ~ 36719989 (+)
G45737 NA non-coding downstream 294951 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 491823 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 516558 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 629658 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 657107 38238539 ~ 38243152 (+)
AMCG00013595 NA other upstream 246639 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 451739 37111768 ~ 37122611 (+)
G45439 NA other upstream 696747 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 835871 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 928284 36620402 ~ 36646066 (+)
AMCG00013616 ccdc9 other downstream 223775 37805207 ~ 37817764 (+)
AMCG00013618 NA other downstream 236939 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 473465 38054897 ~ 38069645 (+)
G45850 NA other downstream 649134 38230566 ~ 38231330 (+)
G45894 NA other downstream 789224 38370656 ~ 38373198 (+)

Expression


Co-expression Network