AMCG00013614 (pak4,LOC103368331)


Basic Information

Item Value
gene id AMCG00013614
gene name pak4,LOC103368331
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37845433 ~ 37852929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013614
ATGCTGCGCCTGTTAGATGTGGAGGTGGGGTCCGGGCAGTGCTTGTGTCTCCGCACCACCCAGGCCTCAGTAAGAGAAGAGGTCAAGGGTCAAGGGGCTCCAGCCATCTCTGCTGGAGCCACGAGGCATGGCCGTACTCCTGGCACCTGTGGTTTCAGTGTAAACGATGGTCGCCAGGTTGTTGTGATTGACCCCACCATCAGCAGATCAATAGATGTGATGGATGCCATGAGCTCGGCCATTCTCCCGCTGTCATCGCTCACCATCTCTGCTCTGATGTCCAGACGGGACGGTGGCGCCATGttcagtaaaaagaaaaagcggATCCAGATCTCTGCGCCTTCCAACTTTGAGCACCGCGTGCACACGGACTTTGACGAACGCGAGCAGAAGTTCGTGGGTTTGCCGCGGCAATGGCAGAGCCTGATCGAGGAGTCTGCCAAGCGGCCGAAGCCCTTCATCGATGCCTCAGTCATCACCACTGTCGAGCCACGCAAGATGATTGTACGGGGCAATAAGATGGCGGTGGACGGCTCTCTCACCTGGCTGCTGGATGAGTTTGAGACTATGTCGGTCACCCGCTCCAACTCACTGCGCCACGGCAGCCCCCCCACACAGCCCCGTCGGGACTCAGCCTCCTCAGGGGGCGGGCAGGAGAACGGCGAAGCCCGGCACAGACCCCACCCAGACAGAGACTGGCACAGGCAGGATTCTAGTGGAAGTGGTGGGGGGGACGCAGGTCGCGAGCGGCAGGGTCACCTGCCCCACCGTTCTCACcgtgaggagggagggagaccaCAGCAGCTGCCCCGGGGGCAGGAGCCTGTgcgacacagagagagaccaggcccccccccaccgcccccaCACAGGGACCGAGACCGAGACAGAGCCAGAGACCGCAGCCAGCAAGACCAGGTTGTAAAGAGGGAAGGGGCCGGGGAGCCGAAGAGGCCCAAGTCCAGCTACACCGGCCGGGACCCCAGCCCCCAGTCGCCCAGGGAGAAACGCCCACTCTCCGGGCCCAATATCCAGACGCCCAGCCTGCCTCTCAGCGATGGGGTGCTCAGGACCACCCAGCAGACCAGCCGGCCTTTCAACACCTACCCCCGCACCGAGAGCGACGGAGGAGGGCGGGGGACCAGCGGACAGGACCTGAAGCCCAGCCATCCCCCCCACAACGGCCCTTCCAGAGGGGAGGGCAGCAGTGTAGTCGGAGGAGGGGGGCATGGGAAAAAATCTCCGGGGCAACCACGGGGGGGCGACCCAGCCAGCCAGCCACCCCCCCGACACCACTCCTCTCACCCGGGTCTGGGTCCAGAACCACAGCCACAGCAGAAGAAACCCAACCCCCCTCCTCGTCACCCCAACCAGCTAGGCCAACAACCGCCACCCCCCCCTCAACAACAACCGCAGCAGCAGCCGCCCCCACCGGCCACCGCCCGATCCCCGCAAAGGGAGCCGCAGCGCGTGTCCCACGAGCAGTTTCGAACCGCCCTCCAGATGGTGGTTGACCCCGGGGACCCCCGTGCCTACCTAGACAACTACATCAAGATTGGCGAGGGCTCCACCGGCATCGTGTGCATTGCCACGGTGCGCAGCAGTGGCAAGCTGGTTGCCGTCAAGAAGATGGACCTGCGCAAACAGCAGCGCCGAGAATTGCTCTTCAACGAGGGGCTGTGGGGGATGAATGAGGAGCAGATCGCCgcggtgtgtgtgtctgtgctgaaaGCGCTGTCCGTCCTGCACACTCAGGGTGTCATCCACAGGGATATCAAGAGTGACTCCATCCTGCTCACCCACGACGGACGGGTGAAGCTGTCGGATTTCGGGTTCTGCGCCCAGGTGTCCAAGGAGGTGCAGCGCAGGAAGTCTCTGGTGGGAACACCATACTGGATGGCACCAGAGCTCATCTCCAGATTGCCCTACGGCCCAGAGGTGGATATCTGGTCTCTGGGGGTGATGGTGATCGAGATGGTGGACGGGGAGCCCCCTTACTTCAACGAGCCCCCACTCAAGGCCATGAAGATGATCCGGGACAACCTGCCCCCCAAACTCAAGAACCTGCACAAGGTCTCCCCTCTCCTCAAAGGCTTCTTGGACAGGATGTTGGTGCGAGACCCCACCCAGAGAGCCACGGCCAATGAGCTGCTGAAGCACCCCTTCCTGACCAAGGCAGGCCCACCCTCCTGCATTGTGCCACTCATGAGACAAAATCGCATGAGATGA

Function

symbol description
pak4 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within embryonic morphogenesis and myeloid leukocyte differentiation. Predicted to be active in cytoplasm. Is expressed in post-vent region. Orthologous to human PAK4 (p21 (RAC1) activated kinase 4).

NR:

description
PREDICTED: serine/threonine-protein kinase PAK 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013614 True 2229 mRNA 0.63 13 37845433 37852929

Neighbor

gene id symbol gene type direction distance location
AMCG00013609 LOC107382997,LOC102784118 coding upstream 67588 37765991 ~ 37777845 (+)
AMCG00013612 NA coding upstream 130537 37713748 ~ 37714896 (+)
AMCG00013603 NA coding upstream 161644 37676708 ~ 37683789 (+)
AMCG00013606 NA coding upstream 169474 37671106 ~ 37675959 (+)
AMCG00013605 NA coding upstream 178489 37660397 ~ 37666944 (+)
AMCG00013615 NA coding downstream 7460 37860389 ~ 37867034 (+)
AMCG00013613 NA coding downstream 19905 37872834 ~ 37876087 (+)
AMCG00013619 NA coding downstream 99243 37952172 ~ 37959732 (+)
AMCG00013620 eif3k,LOC106612601 coding downstream 107534 37960463 ~ 37964226 (+)
AMCG00013628 NA coding downstream 113721 37966650 ~ 37979137 (+)
G45538 NA non-coding upstream 554668 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 781169 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 1061813 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 1115477 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 1125444 36719652 ~ 36719989 (+)
G45737 NA non-coding downstream 23454 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 220326 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 245061 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 358161 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 385610 38238539 ~ 38243152 (+)
AMCG00013618 NA other upstream 23858 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 27669 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 517722 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 722822 37111768 ~ 37122611 (+)
G45439 NA other upstream 967830 36874907 ~ 36877603 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 201968 38054897 ~ 38069645 (+)
G45850 NA other downstream 377637 38230566 ~ 38231330 (+)
G45894 NA other downstream 517727 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 711560 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 792349 38645278 ~ 38673471 (+)

Expression


Co-expression Network