AMCG00013615


Basic Information

Item Value
gene id AMCG00013615
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37860389 ~ 37867034 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013615
GCTGACGTCACCCGAGGACCACACTGCGTGCCAGCTCGAGCGCGGAGCAGTCGCCGGCGCTGCGTTTCTGCCGTCGAGTTATTACCGCATAAAACAGCGAAACAACGCCGAGCAGggtcttgttttctttgtcttaGTTTAGTTCGtctacttttttttgtttgtttgtttctcccgCCGTCGAAATTGTCGCAGGAGAACAGTGTTTGCGCGTGGATGTCTGTGCAGGGAGTGTCGCTATGGCAGTGTGTGCGCTCCGTGCTGTGCAGCGGAGTCCTGCTGCTGGCCTTCGCACTGGACTTCACCACAGAACACGGGGGCTTCCGCTGTGACCCCTCCCCCTGCCGAGGCTTCCCCCACAAAGGCAAGATCCGCTACTTCTGCGAGCCGGGCTTCTACCTCCCCAAGAACGAGCATGTCGCCCACTGTAACCAGGGGACATGGACCTCCTCCCCGTCCGCCTGCGCCCCCATCCTAGTGGGAGACGGGAGCCCCGTGGACAGGGACGAGCAAACTGTTCACAGCGTTGCAACGACAGCAGTTGGCGTGTCCATCTTCCTCCTAACAACCACAGTCTGCATGGTTATAAAGTCCCGCCTCCACCCTTGTCACTCACAGAGaAGACGGTCTTCAGACCAGCTGGACCTGGTAATTGACGGCTTTCCAGTCTTGCCATCCTATGAGGAGGCAGTATACGGGAGCTGGGGTGAGCGCATCCCGCCGTCCCAGGGACCAACTCAGCTCCTATTGGCTCAGGAGCAATCTGGACCTCACCCACAAACTGGCCAACCACAAACAACTGTCCCCTTCCAGCCAGCCAATCAGACTACAGACCTTCAGCCCCCACCTTATGAAGAGGTCCAATCAGATCCCAGAGGTGATGAGAGGGGAGAAGGCCAAAGAGAGATTGGTCAAGCGCTGAGAATCATAGTGTCCTCTGACAAGGATAACTAGACTGCCACCCTGGAAGGCCGTTTCCTGAACAATGTTGCTGTTAGGTTGGGTTCGAGGGTGCAGTGCAATAACTGACCTGAACCGGCGTTTCTGAATGTAAAGACTGGTCGGCCCAGAGTCCACAGCAGTCCGGTGTTTAGAGAGAGTCCGCCATGACACAATATTAGGTGGGAATGAGGATCTTGAGCTGAACAGAACGGTTGCACGGTTTCAGGCTGCACTGTCCAACAGCCCCACCAAAGCTGCTGTGGAGACACGGCTGACCGGTGCAACGGGAGGGGTTTGTGTGGAGTTGATCTGTGTACTAGTAATGTTGTTTCCATGGCTGTAGTGGGAACTGACTCTTCATGACTCCTGTCTGTGATGGGAACCTCGTTCAGCGGAAAGTGCTTCTGTCTGAACTGTCTAAACCAGCCCCAGAACAGAATCACGAAGGAATTTAGCACCTGACTTTCATTGGGAACagttttatgatttaaaaaaatatatatatatatatgtttgcatGGAACAGTTCTGTCTCATCCAGTTGTTTATGTAACCCGCCCTCAGTCATTGGCCTGACTGAGAAAGGCCGTGACAGATATACCACTGTCCGCCAGCCCCCCTGAATGACACGGTTCCTAAAGCACTTGGATATAacttcataattattattattattgttgttgctgttataaTCAAGTTGCCATTCCTACTCACAAGGATTACTTTGGTTAAACAAAATCAGAGGTTGACCAATAATTTAACTCGACTGGATGCcgctcctctcgtttgtaactAAATAAACCTGACTGTATATATCTGTGATTTCTGAAACTGGCCTGTTTCTGTGTGGTGTTCTGCCGACCTGCCGGGTGACGGCACTGAAACTTTTTATTACTGTACTCCTGCAAGGGGGggaaaaactacagaaaatgGCAAAGAAACCAACTGTGTTACCTGTTGGATCCTGCTGTGGACTGGAGGGCATCACAGTCTGAGTCACATGGTCAGAATGAAtgctatctatttatttataattttaagttTGATTATGAGTCAGtgacattttcttgtttatatttaatgtggTTTTGAATCGATATGCGAGTCGAGACCAGGAAACAGAAGCCTGCAAGATGCTCCGCTCAGCCAGACTGTGAATTAATGACCTACTTTTtcgctgtgttgtctgtgctcACATCTGCCATTTAAGAGCCCCAGAAACCTTTATGAAACTCCTTGGCCTGTGtagaaaaaatgaatgtgccttttagttttcttattagaaaaataaaacaaccactataaaatgaaaatcttaatatattttatgtaaatgaaaGAATGAATAGTTTGTATACAATGCATATCCATATATTAAAGTATATTCTTTTGTTGATGCTTAGTTTTTGTCCCCTTCTCACACGCTCGGTCTCTGACCacatccttttttaattttatttccccttCCCTTTTTGTAACCTAAATATTTCCGTCTCAACGCCTTGAAAGCTCAAACCACTAACAAGAATGAAACTAGATCgaatgtggttgttttttttgttaatgggGAGGGGAAGGGAGTTTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013615 True 2530 mRNA 0.48 5 37860389 37867034

Neighbor

gene id symbol gene type direction distance location
AMCG00013614 pak4,LOC103368331 coding upstream 7460 37845433 ~ 37852929 (+)
AMCG00013609 LOC107382997,LOC102784118 coding upstream 82544 37765991 ~ 37777845 (+)
AMCG00013612 NA coding upstream 145493 37713748 ~ 37714896 (+)
AMCG00013603 NA coding upstream 176600 37676708 ~ 37683789 (+)
AMCG00013606 NA coding upstream 184430 37671106 ~ 37675959 (+)
AMCG00013613 NA coding downstream 5800 37872834 ~ 37876087 (+)
AMCG00013619 NA coding downstream 85138 37952172 ~ 37959732 (+)
AMCG00013620 eif3k,LOC106612601 coding downstream 93429 37960463 ~ 37964226 (+)
AMCG00013628 NA coding downstream 99616 37966650 ~ 37979137 (+)
AMCG00013627 NA coding downstream 131546 37998580 ~ 38011180 (+)
G45538 NA non-coding upstream 569624 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 796125 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 1076769 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 1130433 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 1140400 36719652 ~ 36719989 (+)
G45737 NA non-coding downstream 9349 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 206221 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 230956 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 344056 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 371505 38238539 ~ 38243152 (+)
AMCG00013618 NA other upstream 38814 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 42625 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 532678 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 737778 37111768 ~ 37122611 (+)
G45439 NA other upstream 982786 36874907 ~ 36877603 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 187863 38054897 ~ 38069645 (+)
G45850 NA other downstream 363532 38230566 ~ 38231330 (+)
G45894 NA other downstream 503622 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 697455 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 778244 38645278 ~ 38673471 (+)

Expression


Co-expression Network