AMCG00013616 (ccdc9)


Basic Information

Item Value
gene id AMCG00013616
gene name ccdc9
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37805207 ~ 37817764 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013616
TCCACAGCCCTAGACCTGAAGACGAAGGAGGAGAAGGACGCGGAGTTAGACCGGCGTATTGAGGCCCTGCGCAAGAAGAATGAGGCGTTGGTCAGACGCTACCAGGAGATTGAGGAAGACAAGAAGAGGGCGGAGCAGGAGGGTATTGCCATCACAACGCCACGCAAGCCACGACCCCCAGAGGCAGAGTCTGAGCGAAGGAGACCGGAGAAAGAGAGTCTGACCGTCACCGTGGACCTGTCCAGGCCGCCTGGGCAGGAGAAACGTGTGATCAACGACAGGAAGCCGCTGACTCCTCGAGCTCGAGGGGGGGAGGATGGACCTGCGGGGCCAGAGACCCCTGGTGAGCCCCCCCATGGTGACCCAGCTCAGAGCCCCCCCAGGAGAGCGGTGTCAGGGCGGCTGGGCAGGGGTGCCAGGGGTGGCCCGCGCCTGGACAGAAGAGAACCACGACCTGAAAAGACAGAGCCCCGCCCAGATCGGCCTACCTGGGACTGTGAAGCGGGACCGGAGGGGGCGCCCAGGACAGAGCGTACTCCCAGGGGAGGGGGGGCCAGGAGAGGCCGGGGGGGTGTGCAGCAGGGTGGTCTGGGGCCAGACAAGAAGGTTAAGGAGTGGGAGGAGAAGAGACGGCAGAACATTGAGAAGATGAATGAGGAGATGGAGAAAATTGCAGAGTACGAGAGAGGTCACAGGGGGGAACAAGGGGACAAGAACCCCATCCGTAATTTTCTGGATGACCCACGGCGCTGTGGCCCGGTGCCAGATGGAGACAGAAAGGAGGGGAGCCGGCGGCACGTCCGCAACTGGGGGGGGCTGGACTTCGAGAAAGTGAGGACCAGTGCCGAGTGGGACAAGGAGTGGACGAGCCGGCGCACTGGTGCGAAGTGCTCTGACATGACCATGTCGATGACGGGCAGGGAGCGGGCGGAGTACCTGCGCTGGAAGAAGGAGCGCGAGGAGATTGACCAGGAGCGCCTGGCGAGGCACCGCAACGCCACGGGACAGTGGAGGAGGGAGTGGGATGCACAGAAGACGGAGACCATgtTTAAAGAGGAGGCGGCTGCAGCTGCTCTAGAGACCCCAGAGCAACAGAGCGGCAGGAGAGACGACTCACGGAGGCCCCCCAAAACACCAACGTTTGGTGATTTCTTGGGTCAGGGCCGGGGGAAGGAACCAGGCCATGGGCGGGGCCGGGGGAGGGGCAGGTCACCTGGGAAAAGCTACAGCATGCATGATGACCGATGGGTggatgaaggagagagagaggaagcaaGGCCTCAGAATAAGCCAAGCGCTGCCGAGAAAAAGagtggaggtggtggggggCCGCGGACAGCACCAGAGAAGCCGGTGGAGCGGCAGGAGGAGGGGCTTGAGGAAGATGAGGATGAGTGGGAGGACGAAGGGGAGGAGGAGATtgtgggagagggggaggatgaggaggaggaggaggacgacgaCGAAGAGGCAGAGGagcaaaaagacaaaacaaaatcgCCAACGGCAACATCATCTTCATCAACTACCCCTGCTCCCTCTGTCCCCCACTCTCGGCCTCCTCCTGTCTCACCACCATCAGGCTCCGCCCCCCCCAAGGGCAGGGTGAGCCCCCGTGAACAGCGACCCACTCCCCGCAGAGCCAGGGACAACCCCAAAGTTGTCATCCCTGACCCCCAAGACCCCCACTTATTGCAGTCCCCTGAGGCAGGCAAGCCCCTCAGCCCATTCTCCCCCATCGATGGGCACCAGCCTGTGATGGACTGGGGGGAGGAGATGGAGATGCAGTCCCCTCGCAGCAGCCTGGGGGAGAGCCCCCTGAAGGCCGAGGAAATCAGGGAGAGTCCCGCTCCCCCACAGCCTGCAGAGTGCCCCCCCAGTCCCCCCGCCGCCCCGACTCCCATAGACACGCAGCCACAGAGCCAGGcagcccccctccccaccaccaccactactcctactactactactactaccaccaccaccaccaccaccgacCTCCCAGAGGAGATGAAAGCCCCAGCCCCTGTGCCACAGGAAGACACACAGACCGCAGTGACGCAGCCATGTGACCAGCAATCTGAATCACGGACACAGGAAGATCTCAAAGAGGTGCCGCAGGCAGAATTGGAGCAGTCGGAACTGGAACAGCACAAGATGGATGAAGAAGGGGATGCCCCTGTCCTGTCAGAGTGCGCAGACTCCTTTCCCCCAAGTGTGGAAGAAACTGGGGCGAATAAGGACGTTAAAATGATTTGA
>TU56957
AGTGACGCAGCCATGTGACCAGCAATCTGAATCACGGACACAGGAAGATCTCAAAGAGGTGCCGCAGGCAGAATTGGAGCAGTCGGAACTGGAACAGCACAAGATGGATGAAGAAGGGGATGCCCCTGTCCTGTCAGAGTGCGCAGACTCCTTTCCCCCAAGTGTGGAAGCTGGTTCCAGTGCTGCCAGCCCCTCCGACTTGGAGCAGGAGCAGACACAGACCCAGAGCCCAGCAGAACCCCCAGAACAGCCGGCCTCAGGTTGACGGGGGCTCGGCGTCAGTGTCTAGACCCATCACTGCCAGTGTTCACAGTtgacaaggagagagagagagagagagagatgaagaatGAGAAGTTGGAACCCCCAGGTTTGCCTTTACAGTCTTAGAACAGCAGTCTGTGACAAGCAATCTGGGCAATTGCACCtcgcttttttaattttatttttttaatggaattatgattatcatttaTGGGTATTGGCAATCAGTCTAACTAAAGGACACTGCCACCTCTCGGGTGAGGAGAAGATCTGGACATTAAGAAAgaaaatttatatatttctatttttgcttggttggttttgttctttttgtgaGAGCATCCTTGGCCCAGGAGTCCCGATCAGAGAGGGACTTGTCTGTTGTAAACAAGTGaaatcagtgtgttttttttgttttggtttggtggAGACATGTACCCAACCCCCCGGATACTCATCCTCCGCTGTCGTCTGCTCTTATTAGGAAAGGGAAGGCGGCCAGCCATTATCAAAACGTACAATTGACCAAAATGCAATTAGAAGTCAATCGCACAGGCCTTACAAATTGCTActatttgtgtttgatttgattgtgctgttattattattgtattctttaATCTCCCATCCTCCAGTATCGGTCAGTGGGAGCCGCTCATAGTCGCCCAATgcctatactttttttttggtcctgttcttccctcctcctcttcactcTGCTCATGCTGTCTGTGTTTAACATCCAGACCCAGCTGGGTGAGAAAATTCAGTCTTTGCAAAAGTGAAGTGTGAACATGACCTCTCCAAGAAGAACACTGCGTCTTTCTCTCAGAATTCAATTACAATGACGTACTACtgaatagaaagagagagagatcagacTTGTACACAAATAGATATATCAGATTAGCATGCTGCAGATGCATAGAAATGCCTGTTTTGGATGTGGCTTTGGCGAGGTCAGAGGTATTATGTCTGTGTTGGGGGGACAGATAAAGACACTATGTTGGGGAGGGTGTGGGGTGGGtgcttattttatattacagctCTGTATGTTACTGCACAGATCAGGGATGCTATACTGCAGCTTAAAacagattgatttttttatttcacattaaaaaaaaaaaaaaaaaaatgcactaaTCTCCACGTGACCCAGACATGGAGAAACATAAGTCATTTTGTTGGTTATTTAAAGTGTTAAGACCTGATAGCCAACAGGAAGCTTCAGagttaatcaaacaaacaaaaaatggaatTGAATTATGGATTTTAAGATTTGAATCATTGTCACTCACATTccagtttttaatgtttgaaatctTTCAAATGCTTCCATTTATGTTGTCATGAACTGCAGcgagagtttttttgtttgcattgctaAACTAGAGGCTCGAATCAGTCGTCCTCTTATAAATCCATTAAATCATCTTCAGCTTCCAAACCAGTGATGCCTGTCCTCTTGTTGAAAGTACAAAcccagtattttttttaataatgataatcattatttgtgtatataagTGTGACTCTAAGGATGTTTGCAGGTTTGTCTGCAGCAGTTTAAAGAtcactctgtctgtgtgtaaggCAGATGGGGCAGGTTGTAGAATCATgaacaaaattttaaaaaatctctAAATCTAGTCTTCACTTTTACTGGCACTTTTTCCTGTGACGGAACCTCTGGAAACAATAAACTGTCCTataaaacagacagatgggTTCCTGTAATCATGTAggttgaaaagaaaatgcaatgggATTATTACTtatgatttttgtattaaagtCTCTTCTAGTTGGGCGCTTGCATAATGAAgaaatttgatttgttttttggggaGTTATAATTTgtccctttttttaatttaatttccaataaaCATGGCTCACTATTAATTTCTGATTTATCTTACCTTCACACCATACAGCTGATGGAATTTACCGCTCCACTGCGGAACTGCCAGATGTTCCGGGACAGTTCCGTTTGGTTCAGAAGCAAATGTTCCATCTCTCTAAGTAGCTCTGCAGGGTGGCTGTTACCACTgaggtttttgtgtgtgtgtatttgaatcTCTTGTCATCCCAGAGCATGATTGTGAGGCAAGACAACTGTTCACCAAGTAACAGGCATACTACAGCATCCCATAGAGACCGGTACTAACCGATATCAGGCTTTGGGGAGTTAGTGTACAACTGAGAGTGTGGAGTATGCAGGGAGCAAATAGTCCAGATCAGGGCTCCTCAGCTCTAGTCCTGGTCTGCAATCCAGAAGGTTTTTAAAAAGTGGCCTTGGGGTTCCCCAATTCAGTGGCTGGAAGGCCACCTTGTGTGTGGCATTCCTTCTCAAGTGCAGCTCTCTCAATTAGTCAGTtcatttaatgattttattaatcGGATGTGATTTAGTCCTGCCCCAATCTCAAGCCTGACTTCTGCCCACTCAAAGCATAAGTATCTGGCAACAAATGCACCTTCCCAGCATTCCTTGCTTTGCCATGGTTTTTTTAGAGACATAATTTAAACATACATCTGGGCATCTCCTTAACCTTGgagtattgttatttatttactctgaaATAAAGGCAACAGGACAATCTTTAATCTGTAACTATTTGACCAAAGTCCCGCATTAACACAAGTTATTTATATCTCACACACTAATGCATCAGTGGATTAGTGGTCCGCCAACAAAATCAATAGCGACAACAAATTGCACTTTGGACTgtaaaaagctttttctttctgctttttttttttcccccttcagtGACATTGAttgggttctctctctctttcactgcaCGTTTTGCTGAAGccaaaattgtttttttaaacgtttttatttagtttggaCCTcacatgcaaaaaataaacctttcattaaaaaccctgctttaaaagtgtaaa

Function

symbol description
ccdc9 Orthologous to human CCDC9 (coiled-coil domain containing 9).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013616 False 2259 mRNA 0.62 12 37805207 37817764
TU56957 True 3183 lncRNA 0.41 3 37809891 37816573

Neighbor

gene id symbol gene type direction distance location
AMCG00013609 LOC107382997,LOC102784118 coding upstream 27362 37765991 ~ 37777845 (+)
AMCG00013612 NA coding upstream 90311 37713748 ~ 37714896 (+)
AMCG00013603 NA coding upstream 121418 37676708 ~ 37683789 (+)
AMCG00013606 NA coding upstream 129248 37671106 ~ 37675959 (+)
AMCG00013605 NA coding upstream 138263 37660397 ~ 37666944 (+)
AMCG00013614 pak4,LOC103368331 coding downstream 27669 37845433 ~ 37852929 (+)
AMCG00013615 NA coding downstream 42625 37860389 ~ 37867034 (+)
AMCG00013613 NA coding downstream 55070 37872834 ~ 37876087 (+)
AMCG00013619 NA coding downstream 134408 37952172 ~ 37959732 (+)
AMCG00013620 eif3k,LOC106612601 coding downstream 142699 37960463 ~ 37964226 (+)
G45538 NA non-coding upstream 514442 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 740943 37063957 ~ 37064264 (+)
G45408 NA non-coding upstream 1021587 36782569 ~ 36783620 (+)
G45405 NA non-coding upstream 1075251 36727950 ~ 36729956 (+)
G45403 NA non-coding upstream 1085218 36719652 ~ 36719989 (+)
G45737 NA non-coding downstream 58619 37876383 ~ 37932198 (+)
G45805 NA non-coding downstream 255491 38073255 ~ 38073852 (+)
G45812 NA non-coding downstream 280226 38097990 ~ 38098531 (+)
G45854 NA non-coding downstream 393326 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 420775 38238539 ~ 38243152 (+)
AMCG00013595 NA other upstream 477496 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 682596 37111768 ~ 37122611 (+)
G45439 NA other upstream 927604 36874907 ~ 36877603 (+)
G45406 nova2,LOC103039352,LOC103141028,LOC107669728,LOC107089881,LOC107548550 other upstream 1066728 36736677 ~ 36738479 (+)
AMCG00013571 eml2,LOC107757343,LOC107685092,LOC106530730 other upstream 1159141 36620402 ~ 36646066 (+)
AMCG00013618 NA other downstream 607 37818371 ~ 37821575 (+)
AMCG00013629 hnrnpl2,LOC105006371 other downstream 237133 38054897 ~ 38069645 (+)
G45850 NA other downstream 412802 38230566 ~ 38231330 (+)
G45894 NA other downstream 552892 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 746725 38564489 ~ 38566281 (+)

Expression


Co-expression Network