AMCG00013638


Basic Information

Item Value
gene id AMCG00013638
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38188374 ~ 38194330 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013638
CACTACAAAGCCTCCGTCAGTCCATCTGTCCAGCTCCTTGACACTGCGTCCATCTGTCCAGCGCCGACTCCATCTCTTTGTCCATCTGTCAGTGTGTCCGTGTGACTGTCTGTACCTCTCTGAGTGACCATGGCTTACTGCGCTCCTCCAGGTTACCAACCCCAATGCAACCCAACTGTGCCGTACCTGGGCCCATTGTGCCTGAGTCCAGGGATGTCTGTCTATATCCATGGAGTGATCCCTCATCATTGCAACAGGTTTGCGGTGGACCTGCAGTGCGGTGAGTTTGAGGGCACTGACATCGCTCTGCACTTCAACCCACGCTTTGAAGACTGGAATATGGTGGTGCTAAACACCTTCAGGAACGGGGCctgggaggaagaggagcagaCTGAACTGCCCTTCAGAAAGGGGGAGAGCTTCGAACTCATCATCATCGCCAGCGCTGAGGGCTACCAgatcaaCGTGAATGGCTCTCACTTCTACTTGTTCCGGCACAGGATGCCTCTGGAGAGAGTGAGCATGATCAGGATCCATGGAGACGTCACACTGGAGGCTCTCAACATCATCgggTGTGATATAGTCCCTCTTTCCTCCACAGGGGGGAATGGTTGTGTGTCCATCTCCCACTCTCTCAGTGGGTCTTTCTCAGGGAGGAGGAATGGTATACCAGAGCGGAAATCTaccgATCATGTGTGAAGCTCCAATCTATAATCCAGTTCCATCTGAACTTCATGGTGGGCAGCACACGTGACGTGGCATTCCACCTGAACCCACGCATATTGCAGGGCACAGTGGTGAGGAACAGCTACATGGGGGGGTGCTGGGGGAACGAGGAGACCGACCTGGACTACAACCCCTTCCAGGAGGGACAGTACTTTGagatctcGGTACGCTGTGGTAACTGGTGCTACAAGGTGTTTGTGAATGGTCAGCGTTTCTGTGAATTCACCCACCGGCTGCAGCCCTTCACACTGGTGGACACTCTGCAGATCGAGGAAGATGTACAGATCTCCTACATCCACTACTGACCCCGACACTCCACCCCTCATCCACCAGTCTTCCATCTTGCGGCCACACCGTCCTGAATGCATCCTGTTTAGATCTCGGAAGCTAAACAGGGCAGGGCCTGGTCAGTACTTGGATGGGAGACCTCCTGGAAATACCAGTCTCTCATCTGTCTGTATTCCCTCAGCcctttcaatctctctctctgtcttcacAAGAGGCACAGAGGGACAGCCAATGAAAATCCCCCACACAGTAGCCAACCTCTCCCTCCTAT

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013638 True 1285 mRNA 0.54 9 38188374 38194330

Neighbor

gene id symbol gene type direction distance location
AMCG00013631 NA coding upstream 66570 38118324 ~ 38121804 (+)
AMCG00013630 LOC101464407 coding upstream 100563 38077005 ~ 38087811 (+)
AMCG00013625 NA coding upstream 134813 38051221 ~ 38053561 (+)
AMCG00013626 slc8a2,LOC105026810,LOC106612604,LOC106580848,LOC103476200 coding upstream 143824 38032609 ~ 38044550 (+)
AMCG00013627 NA coding upstream 177194 37998580 ~ 38011180 (+)
AMCG00013640 NA coding downstream 151487 38345817 ~ 38353162 (+)
AMCG00013646 NA coding downstream 188139 38382469 ~ 38398767 (+)
AMCG00013647 napa,LOC108413256,LOC103368726 coding downstream 257459 38451789 ~ 38458783 (+)
AMCG00013648 NA coding downstream 273202 38467532 ~ 38468896 (+)
AMCG00013649 NA coding downstream 282637 38476967 ~ 38478698 (+)
G45812 NA non-coding upstream 89843 38097990 ~ 38098531 (+)
G45805 NA non-coding upstream 114522 38073255 ~ 38073852 (+)
G45737 NA non-coding upstream 256176 37876383 ~ 37932198 (+)
G45538 NA non-coding upstream 897609 37251201 ~ 37290765 (+)
G45499 NA non-coding upstream 1124110 37063957 ~ 37064264 (+)
G45854 NA non-coding downstream 16760 38211090 ~ 38212886 (+)
G45860 NA non-coding downstream 44209 38238539 ~ 38243152 (+)
G45862 NA non-coding downstream 51626 38245956 ~ 38246418 (+)
G45863 NA non-coding downstream 55697 38250027 ~ 38252663 (+)
G45865 NA non-coding downstream 159584 38353914 ~ 38354711 (+)
AMCG00013629 hnrnpl2,LOC105006371 other upstream 118729 38054897 ~ 38069645 (+)
AMCG00013618 NA other upstream 366799 37818371 ~ 37821575 (+)
AMCG00013616 ccdc9 other upstream 370610 37805207 ~ 37817764 (+)
AMCG00013595 NA other upstream 860663 37315213 ~ 37327711 (+)
AMCG00013587 zgc:101731,LOC107683430,LOC107757427,LOC105909676,LOC108425805,LOC108277511,LOC103044784,LOC106580895,LOC100194580 other upstream 1065763 37111768 ~ 37122611 (+)
G45850 NA other downstream 36236 38230566 ~ 38231330 (+)
G45894 NA other downstream 176326 38370656 ~ 38373198 (+)
AMCG00013654 NA other downstream 370159 38564489 ~ 38566281 (+)
AMCG00013665 NA other downstream 450948 38645278 ~ 38673471 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other downstream 462266 38656596 ~ 38707354 (+)

Expression


Co-expression Network