AMCG00013680 (rplp2,rpp-2)


Basic Information

Item Value
gene id AMCG00013680
gene name rplp2,rpp-2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38826582 ~ 38829568 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013680
AAAGTGGGTACCGTTTTCTTAAATATCTCTACAATTGTAGGTCTCAACTGTCAGATATGTCGGCGAATTAAAATATAGGCATTTATAATGCCCATAAATGCGAAAAGATTGGCGTTTGTGTTGTTGTAATACTTCAGAAAGTGACCGCATGCGCTCTATATAAAGCTGGTGTAGCAGCAGGATGTTGACATGTGCTCCGAGATATCAATACAGTATTCACTGTCGCTTCCCAGATCCGACATTGCTTTACCCgtttattttaacacagttGAATATTGTAGTGAGATCTTTGACATCGGATCAGACAGAAGTACATCGTTCATGCTTAAAGCAGCATTTGATCAGTATGACAGAGAAATACGTAGCAACTTATGAAACTTGCGTCGATATCGGAAGGGATGTGAGGAGTGCATTGGCCGCGAACTGACCGAATGCGTTACGTGGCCGCTTATCTCCTGGCTGTGCTGGGTGGCAAAACCAGCCCCTCCTCCAAAGACATCAAGGACATCCTCGGGAGTGTAGGAATCGAGGCCGACGATGAGCGTCTCAACAAGGTCATCAGTGAACTGAACGGAAAGGACGTCAATGAAGTGATGAATGCAGGACTGTCGAAGTTAGCCTCCGTGCCAGCAGGGGGTGTTGTGGTCGCTGCTCCTGCCGCGGGGGCTGCTGCGCCTGGAGCTGCTCCTGCCGCGGaagagaaaaaggaagagaagaaagagGAATCTGAGGAGTCTGATGAAGACATGGGCTTTGGGCTCTTCGATTAACCTTGTTTCAATCGGAAAAGCAATAAAgacaggaaaaatacatttgaacaaaggcctttgtaatttgtttattaactGAATTAAGGACAATGTGCCTCCAAAACAAGTGTTTACCATCTATTTTGGTCATGTTTAATCTGATTTCTCCTGTGgttttatgcttttttatttttctaaaaacaatacTTTCTTTGTAAGGAGAAATAAACAACTTCAACTTGTTTTTTGAAA

Function

symbol description
rplp2 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within cytoplasmic translational elongation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in female organism. Orthologous to human RPLP2 (ribosomal protein lateral stalk subunit P2).

NR:

description
60S acidic ribosomal protein P2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02943 RP-LP2, RPLP2; large subunit ribosomal protein LP2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013680 True 1001 mRNA 0.43 5 38826582 38829568

Neighbor

gene id symbol gene type direction distance location
AMCG00013682 NA coding upstream 28751 38790875 ~ 38797831 (+)
AMCG00013679 LOC105903253,LOC105026884,LOC106536949 coding upstream 58956 38764988 ~ 38767626 (+)
AMCG00013674 NA coding upstream 77744 38747115 ~ 38748838 (+)
AMCG00013673 NA coding upstream 85543 38738234 ~ 38741039 (+)
AMCG00013678 LOC105901416,LOC108443093,LOC103038690,LOC102203696,LOC103364869,LOC100693448 coding upstream 103674 38709975 ~ 38722908 (+)
AMCG00013683 NA coding downstream 1787 38831355 ~ 38844099 (+)
AMCG00013692 NA coding downstream 287045 39116613 ~ 39125103 (+)
AMCG00013694 NA coding downstream 341342 39170910 ~ 39177969 (+)
AMCG00013695 LOC105007571 coding downstream 381821 39211389 ~ 39225998 (+)
AMCG00013693 NA coding downstream 397814 39227382 ~ 39233057 (+)
G46035 NA non-coding upstream 205239 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 236423 38588879 ~ 38590159 (+)
G46016 NA non-coding upstream 259263 38566649 ~ 38567319 (+)
G45999 NA non-coding upstream 289524 38536528 ~ 38537058 (+)
G45990 NA non-coding upstream 301170 38524712 ~ 38525412 (+)
G46138 NA non-coding downstream 104895 38934463 ~ 38939511 (+)
G46355 NA non-coding downstream 1562320 40391888 ~ 40412672 (+)
G46360 NA non-coding downstream 1587064 40416632 ~ 40425507 (+)
G46455 NA non-coding downstream 2053281 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 2373496 41203064 ~ 41204149 (+)
AMCG00013681 NA other upstream 4628 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 119228 38656596 ~ 38707354 (+)
AMCG00013665 NA other upstream 153111 38645278 ~ 38673471 (+)
AMCG00013654 NA other upstream 260301 38564489 ~ 38566281 (+)
G45894 NA other upstream 453384 38370656 ~ 38373198 (+)
G46244 NA other downstream 732405 39561973 ~ 39562300 (+)
G46345 NA other downstream 1521084 40350652 ~ 40373800 (+)
AMCG00013729 NA other downstream 1548164 40377732 ~ 40389941 (+)
AMCG00013770 NA other downstream 3598533 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 3815419 42644987 ~ 42648754 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_14309675_14311339 RPLP2 coding CI01000340 null 14309643 ~ 14311436 (-)