AMCG00013682


Basic Information

Item Value
gene id AMCG00013682
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38790875 ~ 38797831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013682
ATGGCTTGCAACAAGCATGAAACTAGCAAGGCTCACGCCATAGCTGTCAGCAAGTATAGTGGCTACAAACACACCCTTGAGTTTGATAGAGGAACTGTGCTCCACCAGTTAAATTCAGAAACAATAAATTCAAAAAGAATAGAAATGAATCAGGAGCATATTAAAGTTGTATTGGATCTCGTGATGCTGTGTGCTAAACAGGAGATCGCTCTTCGAGGACATCGGGAAAATGAAGATGCGCATAACAGGAGCAATTTCTGGGAGTTATTTAAACTGTTGTGCAAATATGATCCAGAGATTCAAAGTAGGATTGATGCGATCCTTAAAAACGCCACAATGACCAAccatgaaacacaaaatgatttCCTTGATTCTGCAGCAACTCTCTTGCTGCACACAATAAATAAGCAGCTGCACAAGAAGAAGGACACCTACTTTGCTATCCTAGCTGATGACTTTGACGGGGCGTCAGTCAGGTCTGGGCATAAGGGGGGAGTTCAAGCCATCCATCCAAGACGCAAATTCATTAATGCCATGTACGTCCACTGTCACTCGCATCGCTTAAACCTGGCGCTATCAGCCATGGCACGGACGTCAGCTGACGCTGCCACTTTTTTTGACACTCTGAACTTGCTATACGCGTACATGAATGGGGCTCAGCGACACGCCCGGTTCCTGGAGCTACAGAAAGAGATGCATTCTGATTGCAGGCCACTTCAACTTGAACGGGGATCTGACACAAGGTGGAGCTCAAGGCAGGGGCATCGCCACCACATCGCCTCTGATGAGCGTGACCTTCCCAGAAGCAATGTGCTTCTTCACCGCCTGGCTGGCCTTGCTGACCATATACTCAGAGTAGTCCACTCCAATCAGCTTGCCCTTGGGGCCGGTGAGGAGAGGGGCAGCTGCCCGGAGCCCCAGCCCTGGCCCAAACCCCACCTCCAGAACGGTGTCATCAGGCTGAATCTGGAGCAGCTTCACTGCATTCTCCTGCGCCAATCTGTGGTGCCACAGGAAAAACCTGGTCACCACCCATCCAAGCAGGGACTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013682 True 1053 mRNA 0.50 3 38790875 38797831

Neighbor

gene id symbol gene type direction distance location
AMCG00013679 LOC105903253,LOC105026884,LOC106536949 coding upstream 23249 38764988 ~ 38767626 (+)
AMCG00013674 NA coding upstream 42037 38747115 ~ 38748838 (+)
AMCG00013673 NA coding upstream 49836 38738234 ~ 38741039 (+)
AMCG00013678 LOC105901416,LOC108443093,LOC103038690,LOC102203696,LOC103364869,LOC100693448 coding upstream 67967 38709975 ~ 38722908 (+)
AMCG00013664 crx,LOC108443020,LOC107395012,LOC106612616,LOC101485936 coding upstream 103067 38682999 ~ 38687808 (+)
AMCG00013680 rplp2,rpp-2 coding downstream 28751 38826582 ~ 38829568 (+)
AMCG00013683 NA coding downstream 33524 38831355 ~ 38844099 (+)
AMCG00013692 NA coding downstream 318782 39116613 ~ 39125103 (+)
AMCG00013694 NA coding downstream 373079 39170910 ~ 39177969 (+)
AMCG00013695 LOC105007571 coding downstream 413558 39211389 ~ 39225998 (+)
G46035 NA non-coding upstream 169532 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 200716 38588879 ~ 38590159 (+)
G46016 NA non-coding upstream 223556 38566649 ~ 38567319 (+)
G45999 NA non-coding upstream 253817 38536528 ~ 38537058 (+)
G45990 NA non-coding upstream 265463 38524712 ~ 38525412 (+)
G46138 NA non-coding downstream 136632 38934463 ~ 38939511 (+)
G46355 NA non-coding downstream 1594057 40391888 ~ 40412672 (+)
G46360 NA non-coding downstream 1618801 40416632 ~ 40425507 (+)
G46455 NA non-coding downstream 2085018 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 2405233 41203064 ~ 41204149 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 83521 38656596 ~ 38707354 (+)
AMCG00013665 NA other upstream 117404 38645278 ~ 38673471 (+)
AMCG00013654 NA other upstream 224594 38564489 ~ 38566281 (+)
G45894 NA other upstream 417677 38370656 ~ 38373198 (+)
G45850 NA other upstream 559545 38230566 ~ 38231330 (+)
AMCG00013681 NA other downstream 14114 38811945 ~ 38821954 (+)
G46244 NA other downstream 764142 39561973 ~ 39562300 (+)
G46345 NA other downstream 1552821 40350652 ~ 40373800 (+)
AMCG00013729 NA other downstream 1579901 40377732 ~ 40389941 (+)
AMCG00013770 NA other downstream 3630270 42428101 ~ 42446480 (+)

Expression


Co-expression Network