AMCG00013694


Basic Information

Item Value
gene id AMCG00013694
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39170910 ~ 39177969 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013694
TATGTCacaccacaaaacacaaaacaggctGACCTGAAGAGCAACTCCCTGCTCACTCTACACGCTACTGACCTGACTGACCCCTCACTcatccctcctctctccctctctgtgtccccAGGAGTGTACATCCTCATAGGAGCTGGTGGTCTTATGATGCTGGTGGGATTCTTTGGCTGCTGTGGAGCTGTCCGGGAGTCCCAGTGCCTTCTGGGATCATTCTTCACCTGTCTTGTGGTCATCTTTGCTGCAGAGGTAGCGGCTGGAGTATTTGGATTCCTAAACAGGGAAAAGcttgattgctGCGGTGATGGGAAAGACAATTCCAATATTCAGCAGCTCTGTCCTGAGCCGAAACAACAgAACTGTTACACAGCAGTATTCGAATTTTTCAATGGCAAGCTCTACATTATTGGTTATGTTGGGATTGGGATTGCAGGAGTGATGATCATCGGGATGGTTTTCAGCATGGTCCTGTGCTGCGCGATACGAAACTCGAGGGAAATGATCTAGCCTCGCCCACGGCCTCCCCCACTACCCCACCCTacccctccttccctcccacTGTCACCACCACCTGCCCCCTGCATTGTGACCTGCGCTGGACCTTAATGGACCCAAGAGCCTCTGAGACAAACCATCCAGACTGGTGCAGTCCAGGAGAGCTGGGTGGTGAATTGGAGAGCCTGCTTTTGAAAAAGTCTGTCAAATTAGCACACTCGGTTGTCACACTGAATAATTTTGTGAGCTGCTACAGACACTTCCATCTTTCTCCAGACTGTAATTAGTAAAACTTGGGTCATGGGTCACGTTTCTACACAGAAAACACTCACATCTTTGATTAGGAAAGCATATAGGACGGTGCATTATGCAAATTTATACAATAACCAAAGCACACGGACACCTGGTAAGGTTTGTTTGTTCACAAGCTATATAGATGCTTTTACAACACCCAAACTAACTAAGGAACTAAGGCCTTGTTTGCAAGCTTCACATACATGCTTTAAAGCTGATTTTTCAAATTGCCTTTCAACGTAGGAGGAAGGCATTTAATTTCAGTACTGTTGCACCCACATGTTTAAGATTCtgatgaaaatattttgtaatgcgACCCCCACCGCATTATGTTTCTTACAGCCAAGCCTGTTGGCCTGGTTTGTGGGATTTAAACCGTATTCTGCATTCCAGTGAGTGAGTGTTTTCTTTGTAGAAAATCCTGTGTTTGTAAAGCGATAGAAAAGGGGGTTGGTGCTGTCTTGGGAAATGGGAAACAcggttaaaaatgaaaaatgttttgcagcaaGCCCTGTACCAAGTGAAAAATGTTTCAATCCCCTACAGCAGTGCTTGGCATAAAACCTCCGTAACTTTAATAAACAGCTGAaagctgtatataaataaaacaatcccaTTTGTGGAAGCAAATATTATAAAGTGTGCTGCGTTGACAAGGATTATCCCCACGGCAATGCtgattgaaaatatacaatatgaCAGATACGCTGCAGGTTAATGTTTTCAAGCCGTGGTTGCTGCACACAACAAAGTCTAAAAGTCTAAAAACAAGAACTAGTTTAACAATGGAAAAATGTGCAGTTCATAATTATGAATACTTTTTTTACTGCAGTTTATTATAGACAAAATGGGACCGAAGGAAACAAAATTACAGGGGACTGCTGCAGTATTTTTCACCTACTGTACagccattttttttctgtttttgttggtaGTGGtgatgttgttttaatataccAGTGCTGTGAACCAGTCCAGTGAGATGGAAGCAGGGTTCTCTGGTTCTCCAGCCAGATGAGGCCAGGAGCCTGTCCTAAACGTGGGTCTGCACTGATGGTGCTCAAGCTTGGGTCACTCATGAGAGCAGCCCAGtccagcagaaaacaaacacacagcggGTGTCGCCTCTGCCACACACAGGCCTGACATTTCCACCTACGGCAGATTACTTTGAATACATCAGATACAACTCTGCTCAATTTTTCACCCTACCAAAATGGTAAAATCAATCCGTAAGCATCTATTCATGAGTATTCAGAATTTTGGAAAAGAGATATGGATTTGAATTAAGTGAATATGATTTGaatttgttctctttttaagaaaaatgaTTAGCCACTACTTCAGTCGATGAAGCCAGGGGGCCTTTAAGTTATTTAACATCATAAAAGTATACACTTATTGTTGACATGAAAGAGATACATTTTCAGTGCTTTGGTATTTATACTTCAGGTATACAAATTCAGGcataaaaggtgttttttttgtagagGGCCCAAATTGGAACCTGactacaacattttattttattaattcactgATTAGCTCAAACTGCCCAAAATtagatgaaaatgtattgctgttaaAATGATTTTAGCATTATCCCTAAAGACCTCACAATGTTCAGAAGTCTGTGTCACCTAGCTGTGCCTTGCAAAAAAATGCCAAGAGAAATCAATTCAGGTTCTGTGTATTAATTTCCCTGTTTCTGGGCCTGAACTCGTGTGTGCTCCTTGTTTGAATTACCTTCGCCAGTGCCCACTAAaagatttgtacattttgtgtgaattttgtaattttacttttttgttgttgtgcgCTCATAATATAGTTTGAAATGGAAAGTACTGTTGAAATGTGTCATAGAGGCAGCTTGTGTTAGATGTAGTGTTTTGggataataatgtaaaaaaaatatatatatattgcttgtCACAGCATGTCTGTTTATAACGTGCCTTTTTTTAagagaagaaatgaaaacatcaatGTTTTGTTGTACCTTAACGATACAGAGCAAAGAAAAAGGGTGTGAGTTTTAAATTTGATGGTGTTCAGGTGACGTTCATGTGAGGGAGCAAAGATTGGGAATGAGGTCTTGAAGTGTTTTCCTGCAGTTTGACcctgctttaaaaatgaaacggCAGACACAAATAAAATTCCTGTGGCCCATGCCTTTTCCCCAACACATGCCAGACACATAAATTAATAGTGCTGATTGTGTTTAATAAGTAAATTGTGTAAATTAGTAAATTCTCAGTTGTACTACAGCAAGGCATTTTGACAGAGCAGTTCTCTAACATTAGCATAGATGATCCAAACATTTGTGGTAATGACCAGCCTCCAGCAGTCATGCCGTACTCTGGGCCATTTCATCCTTCAGGTGTTGTCTCTACATGTAGGTAAGTTATTTATGCATCTGGATTCAGGACTCgcagatcatttatttttcaatgtcgACCAATTGGCAGAAATATCAGACATTTGTTAACTGAACAGTCATTCACCGTGGTTGAGCACACTTTGCCACAGTTCTCAGATCTACAAGTATATTCTGTAATTGTGTTGCATGAGAAATACATCTTAGATATGTACATTGATTATTGTCAGAGGCAGTCTGCACAGTAGCAACTCGTGGTATTTCAGCAGACTGATCAGTAAGTTAGAAAATCATGGGAAAATTACTTAGATTGCACTTTTGTTAGTGGAATGCTTTACCGATTTTAATGGAAGTTTATTGATGATAGAAAGTAAGACATTTTGCATCAGGTTTTTGCTTATGAGGGTCTGTAGTCAGGAGATTAAGAGAGTTGTTCTTCAGGTATTAGGTTAGTTTTACACCGTCATtccttaaaacatatattttgagAAGGCAGAAAGAAGTAAAGAAATCTGGGATGAGAAGTACTGTatgcaagcaaaaaaaaatgcattacaattaaacatGTTGATTGATCATatgttgttaatttatttaatggctGATTTTATCTGAAGGTTCAATTGGCATTGAAACTTCTCAGGAAGATAAATGTGCAAAAACTAATAAACTTTTTCTAAAGTTTT

Function

GO: NA

KEGG:

id description
K17354 TSPAN2; tetraspanin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013694 True 3861 mRNA 0.40 5 39170910 39177969

Neighbor

gene id symbol gene type direction distance location
AMCG00013692 NA coding upstream 45807 39116613 ~ 39125103 (+)
AMCG00013683 NA coding upstream 326811 38831355 ~ 38844099 (+)
AMCG00013680 rplp2,rpp-2 coding upstream 341342 38826582 ~ 38829568 (+)
AMCG00013682 NA coding upstream 373079 38790875 ~ 38797831 (+)
AMCG00013679 LOC105903253,LOC105026884,LOC106536949 coding upstream 403284 38764988 ~ 38767626 (+)
AMCG00013695 LOC105007571 coding downstream 33420 39211389 ~ 39225998 (+)
AMCG00013693 NA coding downstream 49413 39227382 ~ 39233057 (+)
AMCG00013704 ppfia4,LOC107727737,LOC107739270,LOC107656008 coding downstream 100828 39278797 ~ 39279591 (+)
AMCG00013702 NA coding downstream 168921 39346890 ~ 39406693 (+)
AMCG00013708 LOC106566082,LOC105912002,LOC106572854,LOC103367601,LOC105023759,LOC106566400,LOC103022582 coding downstream 351305 39529274 ~ 39540592 (+)
G46138 NA non-coding upstream 231399 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 549567 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 580751 38588879 ~ 38590159 (+)
G46016 NA non-coding upstream 603591 38566649 ~ 38567319 (+)
G45999 NA non-coding upstream 633852 38536528 ~ 38537058 (+)
G46355 NA non-coding downstream 1213919 40391888 ~ 40412672 (+)
G46360 NA non-coding downstream 1238663 40416632 ~ 40425507 (+)
G46455 NA non-coding downstream 1704880 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 2025095 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 2235391 41413360 ~ 41413600 (+)
AMCG00013681 NA other upstream 348956 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 463556 38656596 ~ 38707354 (+)
AMCG00013665 NA other upstream 497439 38645278 ~ 38673471 (+)
AMCG00013654 NA other upstream 604629 38564489 ~ 38566281 (+)
G45894 NA other upstream 797712 38370656 ~ 38373198 (+)
G46244 NA other downstream 384004 39561973 ~ 39562300 (+)
G46345 NA other downstream 1172683 40350652 ~ 40373800 (+)
AMCG00013729 NA other downstream 1199763 40377732 ~ 40389941 (+)
AMCG00013770 NA other downstream 3250132 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 3467018 42644987 ~ 42648754 (+)

Expression


Co-expression Network