AMCG00013705


Basic Information

Item Value
gene id AMCG00013705
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 39553959 ~ 39560813 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013705
ATGAATGGCAAAGTCATTCCTCACACCCCCATTGCCGTGGATTTCTGGCAGGTGCGCAAATGCAGCTATGTGCGCTTGTTTTTCCTCTCCCACATGCACAGCGACCACACTTCAGGACTGACCTCCACCTGGACCAACAGGCCCATCTTCTGCTCCCCGGTGAAGGAGAAATGGATACACCCCCTGGAAGTTGGAGACACGCACATGTTGCCCTTGGATGACATTGGCAAGGAGACGATGACAGTCACCCTGATTGATGCCAACCACTGCCCGGGATCGGTCATGTTTCTCTTCGAAGGCTACTTTGGCACCATCCTTTACACAGGTGATTTCCGCTACATGCCATCCATCCTGCGTGAGCCCTGCCTGGGGAACTACAAAAGGATTGATGTCCTGTACCTGGACGATACCAACTGCGACCCCTCTAGGACCCTCCCATCCCGCCAGCAGGCCACCCAGCAAATCAAGGAGATCATCCGGAAACACCCACTCCACAATATTATCATCGGCCTCTATGAACTGGGCAAGGAGACTCTGTTGGTGGAGCTGGCTATGGAGTTTAAGACCTGGGTGGAGGTGAGTCCAGAGCGGTTGCAGACCCTGCAAGCCCTGAACCTCCCAGACGTGTTCACCACAGAGCCGGGGGCCGGGCGCATCCGTGTGGTGTCTCACTCCGAAATCAGAAGCTCTTCCTTGGTTTTGTGGAACAGGGAGCACCCTACACTGGCGATTCTACCCACCAGCCGACCCCTGGCTGTCATCCACCCCTGCATGTATGTGGTGCCCTACTCTGACCACTCCTCATTCCAGGAGCTGGAGGACTTTGTTGCGGCCCTCAGACCCGCTTCTTTGGTCCCTATTGTGGGCACCTGCATCCCCCACTTCTCCGCTCTCCTGAGCCCCAGTAAAGCAACCAGGGATGTTTTTGTGCCCGACTCTGTAAGGCAGTTTATGATGAATCTCCCCAAACCCAGTCCCCAAACCAAACCCCAGCTTGGGGTCTCCCATTGTGGCGTCCCTTTCCCCAGGGGAGTGGTCTTCGAGTCTCCGGTTCGCAGTACCGAGTCTCCGGTTCGCAGTACCAAGCCTCCCGGAGTCCCGCAGGTGGAATGCCAGGAACAAAGTCCATTGGAAGATCCAGATCTGGATTCTGAAGAGGAAGGTGACCTGGATTGCCTCGCCACCAAAAGGCTCCCCGGGAAGCAGGTGAAGCTGCAGGATATTTGGAACCGTAATGTTGCCAAGAGGATGTTTCCGGATTCAAAGATGCCTGAAAACGAACTCGCACAGTCCACTGCCCCTTCTGCTGATAGAGAGATGAAGCAGACAAGGAGGATGCAGGCTGACCTTTTGGTGCCACCCACCGTGGAAGAGCTACCCCAGCCTATGCCTTATGATTCTGCCTGTATGGGTCACCTTCTCGCTGCCTCGACCCACAAGAATAATGCAGACATGAGGTCCGGGAGGTTACGCAAGGACTGGAAAAGGCAGCAACTGGCTTTGGCAGAATTGACCTGCATCTCGGGAAATGGGATCCCATCTAAGCAGCGCCTATCTGGAAAGGCCACCAATCCTCTCTTTGAACAATCCCAGAATTTTCCTGAATCTGAGTGTTCTGGTTGCAGTTCGTTTAATTGTAAGCACTGCAGACTGGAGGCTGAGGACCACTGGTTGTCTCAGCTCACAGAACACTCCTCTCTACCAGATGGAGAAATCTTCAGAGATACAGCACACACAGATGAGGGATTTTCCCAAAAATACCATCTGACTCCATTCAGTTTTCCACCCCATGATGGTCCTTTAACAAAGTTGTGGAGAGATTCTTCACTCGTTCCAAGCACTTaaacagttattgttttatggtGTCAATTGTATTTTAccccagtttgttttttctacttcGCCACTAGGGggtacttaatttaaaaatggtaaaatcatgttttttccaAGGCTGTTGACACTTGGACGCTCTCAGTGGACACTGAGAACcaattctgaaataaaaacagggtAAGCTGTGCTCAGCTCATAGCTGTGCCTGAATATCTCCTAAATTCCAAACTTTTACCTGAAGAATACTAAATCGACAGTATGTCCTTGCAGAATTTCTACCATACCTAGAAAACACTTTTGCCAAAGTAGAAACATTTTAACCATTTATCACTTTTATTAGTTCAATTGAGTGTTATGAAATGCTGCCAATAATCCCTCCAGCACTAGTTTTATAAACAGAGTTGTGGGGAAATCCCAGGCTCATCCTTTAGTAAGACTTTAGTAATGGCTATagattgttctgtattttaagtGTTGTATTTCCAGGAATTGATTACAACATCAGGGAAGTGCTTTTGTCTTGGGAACTGAGTGATTAATGATAACTTGTGACAAACCACCACTGCAAAACCACTTCTACTTCAATAAACCAGATTTAATTTTGGGTTGTGGTATAGCGGCTTGTGCAGTAAAGGCCCTGCAAAACTCACCTGGGAAGTTAAATGACCTTGCAAATAGATGTACAGGgagtatgtgtatatgtaagCAAAGTACCATTTATAATAAttgaagtgtatatatatatatatatatatatatatatatatatatacacacacacacagtactatATGTTTATCCAATAATTTAGGTTTGTATTTGAGATAAATCAAGCCTGTTTCAGTCTATTGTTTATTGGGGCATTTTGAATATGTGTGTATTGTACTCAAGTTAAATGTATTCGGGGGTACCACGGTGGGTCAGTGCTTAGTGCTgttgcctcacagctcctgagAACGTGGTTTA

Function

GO: NA

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013705 True 2802 mRNA 0.48 5 39553959 39560813

Neighbor

gene id symbol gene type direction distance location
AMCG00013708 LOC106566082,LOC105912002,LOC106572854,LOC103367601,LOC105023759,LOC106566400,LOC103022582 coding upstream 13367 39529274 ~ 39540592 (+)
AMCG00013702 NA coding upstream 147266 39346890 ~ 39406693 (+)
AMCG00013704 ppfia4,LOC107727737,LOC107739270,LOC107656008 coding upstream 274368 39278797 ~ 39279591 (+)
AMCG00013693 NA coding upstream 320902 39227382 ~ 39233057 (+)
AMCG00013695 LOC105007571 coding upstream 327961 39211389 ~ 39225998 (+)
AMCG00013707 pfkfb2,LOC108436129 coding downstream 42288 39603101 ~ 39627214 (+)
AMCG00013706 NA coding downstream 72378 39633191 ~ 39640768 (+)
AMCG00013711 NA coding downstream 156154 39716967 ~ 39732114 (+)
AMCG00013712 NA coding downstream 176914 39737727 ~ 39745523 (+)
AMCG00013719 NA coding downstream 192921 39753734 ~ 39754705 (+)
G46138 NA non-coding upstream 614448 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 932616 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 963800 38588879 ~ 38590159 (+)
G46016 NA non-coding upstream 986640 38566649 ~ 38567319 (+)
G45999 NA non-coding upstream 1016901 38536528 ~ 38537058 (+)
G46355 NA non-coding downstream 831075 40391888 ~ 40412672 (+)
G46360 NA non-coding downstream 855819 40416632 ~ 40425507 (+)
G46455 NA non-coding downstream 1322036 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 1642251 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 1852547 41413360 ~ 41413600 (+)
AMCG00013681 NA other upstream 732005 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 846605 38656596 ~ 38707354 (+)
AMCG00013665 NA other upstream 880488 38645278 ~ 38673471 (+)
AMCG00013654 NA other upstream 987678 38564489 ~ 38566281 (+)
G45894 NA other upstream 1180761 38370656 ~ 38373198 (+)
G46244 NA other downstream 1160 39561973 ~ 39562300 (+)
G46345 NA other downstream 789839 40350652 ~ 40373800 (+)
AMCG00013729 NA other downstream 816919 40377732 ~ 40389941 (+)
AMCG00013770 NA other downstream 2867288 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 3084174 42644987 ~ 42648754 (+)

Expression


Co-expression Network