AMCG00013725 (plxna2,LOC108425528,LOC103385266,LOC106567158,LOC107594012)


Basic Information

Item Value
gene id AMCG00013725
gene name plxna2,LOC108425528,LOC103385266,LOC106567158,LOC107594012
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40111794 ~ 40120125 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013725
ATGGAGAGCCGGTTATATGTTCGAAGGACTTTTCCATGCATCCCGAGAGGGGCTCCGTGTTCCCTGGGTTTTTGCCTACTTGTTTTGCTGATCCTCTCCCCGACACCTTGTAGCAGCCAGGCCAGCCTCATCAGCTTTCACACAGAGAATCGGGACTGGTCCTTCAACCACCTCACGGTGCACCAGAAGACAGGAACACTGTACCTTGGTGCTGTGAACCGGGTCTACAAGCTTTCAGGCAACCTGACCCTCCTGGTGTCCCACAACACAGGGCCAGAGGATGACAACAAGTCCTGCTACCCACCCCTCATCGTACAGCCCTGTAACGAGCCCCTGACGGCCACCAACAATGTCAACAAACTGCTACTCATCGACTACTCCCAGAACCGGCTGCTGGCCTGCGGGAGCCTCTACCAGGGGGTCTGCAAACTGCTGCGCCTAGATGATCTGTTTGTGCTGGTGGAGCCCTCTCACAAGAAGGAGCACTACCTGTCCAGTGTGAATGAGACCGGCACCATGTATGGGGTGATCGTGCCATCCAAGGGCGAGGACGGCACGCTCTTCATCGGCACGGCCGTGGATGGCAAGCAGGACTATTTCCCCACCATTTCCAGCCGCAAGCTTCCCAAGGACCCCGAGTCGTCGGCCATGCTGGACTATGAGCTGCACAGCGACTTCGTGTCCTCCCTCATCAAGATCCCTTCCGACACCCTGGCGCTCATCTCGCACTTCGACATCTTCTACGTTTATGGCTTCTCCAGTGGCAACTTTGTCTACTTCCTCACTGTCCAACCCGAGACCCCGGAGAACAACATGCCCTCGGGGGGCTCCTCCAACGACCTCTTCTACACCTCGCGCATCGTGCGGCTCTGCAAGGACGACCACAAGTTCCACTCCTACGTCTCGCTGCCCGTGGGCTGCATCCGCAACGGAGTAGAATACCGCCTGCTGCAGGCTGCCTACCTGTCCAAGCCCGGGGAGGTGCTGGCCGCCTCCCTCAACATCTCTGCCCAGGACGACGTGCTCTTTGCCGTCTTCTCCAAGGGGCAGAAGCAGTACCGCCGCCCCCCCGATGACTCGGCCCTCTGCGTCTTCACCATCAGGGACATCAATGCCCGCATCAAAGAACGCCTGCAGTCCTGCTACCAGGGAGAGGGCAACCTGGAGCTCAACTGGCTGCTGGGCAAGGATGTCCAGTGCACCAAGGCGCCTGTGCCCATCGACGACACTTTCTGTGGCCTTGATATCAATCAGCCCCTGGGAGGCTCTCAGCTGGTGGCCGGCCTGACTCTCTTCACCGAGATCCGGGACCGCATGACCTCAGTGGCCTCCTACATCTACAACGGCTACTGCGTGGCCTTCGTGGGAACCAAGAGTGGCCGGCTAAAGAAGGTAGGTCTGGAATGA

Function

symbol description
plxna2 Predicted to enable semaphorin receptor activity. Acts upstream of or within optic vesicle formation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; hatching gland; olfactory field; optic vesicle; and retina. Orthologous to human PLXNA2 (plexin A2).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: plexin-A2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013725 True 1407 mRNA 0.59 2 40111794 40120125

Neighbor

gene id symbol gene type direction distance location
AMCG00013720 NA coding upstream 214626 39789632 ~ 39897168 (+)
AMCG00013724 NA coding upstream 331604 39779219 ~ 39780190 (+)
AMCG00013721 NA coding upstream 332740 39761180 ~ 39779054 (+)
AMCG00013719 NA coding upstream 357089 39753734 ~ 39754705 (+)
AMCG00013712 NA coding upstream 366271 39737727 ~ 39745523 (+)
AMCG00013727 LOC106567158,LOC108425528,LOC103366170 coding downstream 63810 40183935 ~ 40271437 (+)
AMCG00013726 NA coding downstream 207773 40327898 ~ 40341318 (+)
AMCG00013728 NA coding downstream 325524 40445649 ~ 40467813 (+)
AMCG00013734 magi3,LOC103386588,LOC104962253 coding downstream 354900 40475025 ~ 40478788 (+)
AMCG00013731 magi3 coding downstream 435552 40555677 ~ 40604675 (+)
G46138 NA non-coding upstream 1172283 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 1490451 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 1521635 38588879 ~ 38590159 (+)
G46016 NA non-coding upstream 1544475 38566649 ~ 38567319 (+)
G45999 NA non-coding upstream 1574736 38536528 ~ 38537058 (+)
G46355 NA non-coding downstream 271763 40391888 ~ 40412672 (+)
G46360 NA non-coding downstream 296507 40416632 ~ 40425507 (+)
G46455 NA non-coding downstream 762724 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 1082939 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 1293235 41413360 ~ 41413600 (+)
G46244 NA other upstream 549494 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 1289840 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 1404440 38656596 ~ 38707354 (+)
AMCG00013665 NA other upstream 1438323 38645278 ~ 38673471 (+)
AMCG00013654 NA other upstream 1545513 38564489 ~ 38566281 (+)
G46345 NA other downstream 230527 40350652 ~ 40373800 (+)
AMCG00013729 NA other downstream 257607 40377732 ~ 40389941 (+)
AMCG00013770 NA other downstream 2307976 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 2524862 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 2530065 42650190 ~ 42661844 (+)

Expression


Co-expression Network