AMCG00013728


Basic Information

Item Value
gene id AMCG00013728
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40445649 ~ 40467813 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013728
CTTCTAGGGGGGCCCCACCAAGTGCGGATCTTCTGAAGCTTAGCCTATGGGCTGTAGAGTTTGTTTTGATGGACATCGTAGTCGACCAATTACAGCGCAGTAAACACGTTCCAAGAGGCGGGCCTTCCATCGCCAAGGTATCCCATGTCATCGGAGCAAGGcgctttgtttttcttggtaaaaaaaaaaaggtcggGAAAAATCAAATCCGAAACGATTGACAGTGTGTAGGAATCCGTTGCAATCTCCTCCGGATCAGAAGTCGCTTCGTGAGCAAAAACGGCGCAGGGAGAGCGGAGAGTATCAGCCCGGGTTTGGATGCGGGTCTGTGTTTTTTCCAGTTCTTGGGAGCTGCCGAGATTGCAAGGCGGAAGGGAATTCACAAGGAAGGGGAGAAAAGAAACTCATCTGGGGATGCTCGTCTTGCGCGAACGGGGACACTGAGCCCGGGCTTATCATGACGAGACCACGTTTCCGATGTAATGCAAGTGTGGGAGTTTTGATATAGACAATTTAGCGGACATTTAATgtatagatatacatttataattctaAAATAGTTGCCAACTATTCATGGTATTGGGATCCAAAATGGCGGCGGGGTGGCCCATCCCCCCTGCGCTGTTCCTGTGGGTTGTGGGTGCCGTGGGTCTGGACCTGTGCCCGTCTCCGTGCTCCTGCTCCGGACAGAGCGGCCCCGCTGGACTGCTGGACTGCAGCCGAAAGAGGCTGCTCGCCCCCCCCCTGGACCCGCCTGCCTGGGTGTCATCCCTgAACATGAACTACAATGAACTGGATGCTGTTCCATTCATGGGAGAAGTGACTTCAAATATCACAGTTCTGTCATTAGTCCATAACCGAATTGCCGAGATCGTCACCGAACACCTGCAGCCCTATGTTTCCTTGGAGTCCTTAGACCTCAGCTCCAATGCCATCGCAGGGATTAAAGCGGGCACATTTCCTCCGATGCAGCTGAAATATCTAAATCTGAGCAACAATAAGATAAGCACCCTGGAGCCCGGATGCTTTGACAACATCTCCAGCTCTTTGATCGTTCTGAAACTAAACCGAAATAGAATAGCCTTCCTCCCATACAAAATCTTCAAACTGCCTCAGCTGCAGTACTTAGAGTTGAAACGCAACAAGGTTAAAGTCGTGGACAGTCTCACATTCCAAGGTCTGGATATGTTGAAGTCCCTGAAAATGCAGCGCAACGGCATCACTAAGCTCATGGATGGTGCCTTCTTTGGACTCAATAATATGGAAGAGCTGGAGCTGGAACACAATAACCTGACAGAAGTGAACAAAGGCTGGCTCTATGGGCTGAGGATGTTACGTGTGCTCCGCGTTAGTCAGAATGCTATTAGCTTGATCAGACCAGATGCGTGGGAGTTCTGCCAAAAACTTGaggagctGGATTTGTCGTATAACCACCTGACTCGCTTGGAGGACACTGCCTTTTCTGGGCTGGGTTTACTAGAGACCCTCAATTTGGGAGAAAACTCAGTGAGCCACTTGGGGGAAGGAGTCTTTGCTGGCCTCTCTAACTTGTGCACTTTgcACCTCAACACGAGCAGCTTGCTGTGTGACTGCCAGCTGAAGTGGTTAGGACAGTGGCTGATAGACAACCGATTCCAGCAGTCTGCCACAGCCGTGTGTGCCCACCCCACCAGCCTGGTGGGCAGGAGTGTCCACTCTGTGGATCTGGAGGACTTTGTTTGCGACGATTTCCCGAAGCCACAGATCACTATGCACCCCGAGACGGCTGTGGTCCTGCGCGGCACCAATGTGACACTGAGTTGCACGGCGGCCAGCAGCAGCGACTCGCCCATGGCCACGGCCTGGAGGAAGGATGGCGAGGTGCTGTATGATGCCGAGGTGCAGAACTTCGCACGGTACCGGGAGCAAGAGGGGGAGCTTGTGGAGTACACCACCCTGCTGCACCTCCTCAACGTCAACTTCACAGACGAGGGCCGGTACCAGTGCGTCGTCACCAATCACTTTGGCTCCAATTACTCCAACAGGGCCAAGCTCACGGTCAACGAGCTGCCCTCCTTCTTGAAGACTCCGATGGATCTGACTATTCGCACCGGCGCCATGGCCCGCCTGGAGTGCGCTGCCGAGGGGCACCCCTCCCCCCAGATCGCCTGGCAGAAAGACGGGGGCACGGACTTCCCTGCTGCCCGAGAGCGCCGCATGCACGTCATGCCCGACGACGATATCTTCTTCATTGCCAACGTCAAGACCGAGGACATGGGCGTGTACAGCTGCACAGCACAGAACGCTGCCGGGAGCCTATCAGCCAATGCCACTCTCACGGTGTTGGAAACCCCTTCTTTCTTGAGGCCCCTGGAGGACCGCACTGTGGCCCGCGGGGAGACGGCAGTGCTGCAGTGCATCGCGGGGGGCAGCCCTGCGCCTCGACTCAACTGGACCAAGGACGATGGCCCCCTCATCGTCACCGAGCGGCACTTCTTTGCCGCTGCCAACCAGCTGCTGATCATTGTGGACGCGGGCCCCGGGGACGCCGGCAAGTACACCTGCATCATGTCCAACACGCTGGGCACAGAGCGCGGACACATCTACCTCAGTGTGGTCTCCTCCCCGAACTGTGACAGCGCCGTGTCGACGGGCTACGACGAGGACGGCTGGACCACGGTGGGCATCGTCATCATCGTGGTGGTGTGCTGTGTGGTGGGCACCTCGCTGGTCTGGGTCATTGTCATTTACCACATGAGGAGGAAGAGTGAGGACTACAGCATCACCAACACAGATGAGATGAATCTGCCGGCTGATATTCCCAGCTACCTATCCTCCCAGGGGACGCTGTCTGAGCCCCAGGAGGGCTACAGCAACTCCGAGGCCGGAAGCCACCAGCAGCTAATGCCTCCTTTACCCAATGGCTACGTCCACAAAGGAACAGAAGGAGTGTGCTACGTGGACTCGGGGAGTGAAATCGAGACGGACATTAATGGTCTGCTGACGTCCGGGATCCAGAACAGAGTGGGCTCTCTCTTCACTGGGAGGAGCAGCTTTCACCCCGGGGAGCCCAGGGAGGGGCTGGCCGGAGCGCCCACAGGTGGCACCGGACCATTAGTCATTTGCTCTGACTGCTACGACAACGCCAACATCTACTCCCGGACCCGTGAGTACTGTCCCTATGCCTACCTGGCTGAGGACGACCCCCTGGATAAGACCCTGTCCAACATCATGGTGCAGCTTCCCAAAGACTCGTACCCCAGCCACGCCCAGCACGAGGACACGGCCCTAGAGAGCCTCATCAACCACCCGGACACCTCTGTGTTTGTCACCAGCCATGACAAGAGGCACAGCGTCCGGAGCTCAGCTCCACTCTACTGCACTGATGGCCAGGCCAGGCCGTTCTGGGGAGGGAGTGAAGAAGCCTCGTTAATGCCTCACGGTGGCTTGTCACAGCACCCGGTGACTGTGCACGACAATTCCCGAGAGCAGAGgcaggaggaggcggaggatgCAGAGGCAGAGGAAAAGGACCTTTCTTCAGACTCCTCAAACCACAACCTGAACTCACAGGAACACAGCAGTGCCTCTTACAGAACTCCAAGCATACAGGAATACAAGGCCACAACATAGACAAAGCCACGGTGTCTCCACCACACACAACaaatcttttgttgtttttttgttgttgtcgatTTTCGttcttttttgcctttttaCCCACTACCTCGAAAGAGACGTCACTATCTGCCAAAAAATGCGTACGTGTATGTTTACATTCAGATATGAGCTTTTCCATTCTCGcacgtttttttatttgttcctttCTATTAGCACTCAAGACTGACCAACGGCAGCTGGTGTGTCTTATGCCTGGCTGTTCTCACTTTTGGGAGGGTACTCTTCTATGAATGTACACGTGTCAAATACCTGGGCCTAAGCctgatgttatttattaaaagtCTTAAATGATTGACTCCTTCTCCCACTCCGTGCACGCAGGAATTACAACAATGTGGAAGAGCCTGCTTTACTCACATCTGTATGCCAAGAGAACTGTACTAAACATGAATTGCCTTTTGCTCATGGTAGTAATTACCCCTGGACCCCTGGCCACAGAATTGTGAAACCACCAGATCTTGATTCTTTGAGCAAAAGGCTGAAGCTGCAGATTTTTTGCAGTGCTTTTGAATGGTTATACACTGTGGTTTTTTCCAGCCGCATGCTCACAGTGTTCCATTCcggattattttttttattctgctggACCGCTCACATCACGGTTTCCCTGGAGCAAACTTTATCACACTGTTGGAATTGTACATAAAGTATATAATTTCCCAGtttgatttcatatttcacTTGCCTAAGTGTTCAGcttaatgtacatatttttttctatcatgttaaatatatattgtacaaagACTggtatacaatgttttaaagaaaagttgTCAAAcggaagaaaatgtatattgcaCATGTAACATTCATGGTTATGATGGCCACTGTGAATGGGATTTCTTTAGAGAAAGGCAGGACCTTAAAATATTGTGCACAAGtcgttttttatttgtgtgtttctgaccCGGGGAGTTAGCTTATCTCTGTGTAAAGCTTTGATAGATACAGCCCAGCTTCTTTAACAGCTGATGTTGGTGCAAGAGGCCTAACCTTCCCCACTCATCTTTAACAAGTTTGATTGCCTTTTGTCCTCAGTTTAATCACGGTTACAGTTTGTGTCTGCTTAACTACCCTATGCTAATGTTTACTAGCACTGGATCAATGGACTTTCCTCCACAGAGATATGATCTTAGAGGCCATTGGCTGTAGACTTATGGCACTTATTTTCAATATACCTTCAATGCAGCAATCGCATGCTGTGCAGCAGAACTAATGTCTGAAATCAGAAAGCACTGCTTTGAAATATTCCTGTATTTTCCCTGAAATTGTTGTCATTCCATAGGCTTGGGAAAAGTCTGTATTCAATTTCAgtttagtaaaaataataataaaataattctactaaattatatataataatgcatatataatatacacacaggcaaatgttttgtatatattatgagtcgttttttgtttttaatgtaaaatcctttgtttttgtttgtataacagCTCGATACGTTATccacattttaagatttaaaagacTACCTGGAgttgaaaaactaaatttacattatttttaacatttttccaGTCTTGTGACCATCAAATACTACACCTTTCCTGTTTTGTATTCTATACTTTACTGCAGCACATGCAGATATTTTAAACTCTCCGTTCCATACGTTTTCCCCTCTTACTCTTCAAAATCACAATTGAGGTATTTACTAGTAAAACAATTTATCTTAAAATCATCAGAATGATCTTTTGTACTTGAGGTCAATTTTGGCTTCATAATTTTAAAGGTTTATTCCCTTCGTTAACGTTAAGCAGTGCACTCGGTACAGGATTGTGTTTATAAATGGTAATGACCCAATTATCATTTTCATAGGCTACCAGTTGGAGACCTCATTCTCAAGCTATGTGGTACATGAATGAACAGACTTAAAGCTAGCTCAGAATTTGCACCTTGTAACTGCACACATTTGGCCTTAAATAAATCCTTGTATTTGCgctttaattgtgtttaaatacagtaaaactgTATATTGATGTTCTGGTTCGTTCAATTGgtcttttatttaatctttaccAAGCAGATTTGTCAGTAACCACACTATTTCTTATACTTAAGTCAAGTGGAtgggaattgtatttttcaatctGCCAATTGCATTGTAGTTTTAAAACTTTGTTCTTCACAACTCACATTCCTATAGGAGACCAAGAACAATAGGTGTGCTCTAGCATTGTGTTTCTCCTGTGTCAGTAAAGATGCAATGCAAGTCCTTTTCATTACGTTAATATAAATTCTCTTCACGAACTGCCTATGGTGGCGTTTCGGAATCGTGTATTTTCCTTATACAATAGTGGCCATGCATTATAACAGACCTGTCACCATTTCATCAACGGGTCTGCTTTGCTTTGAATTTCTAGACCTAGAGATTGTCGTAGCTGTTGGTGTTCCAAAAGTGTGCTTGCTTACCTTTCTCACTGCGGAGAAGATTTGCAGATCTTGGCAACAATGAAAAACTGTCGGGTACACACGCATCTTTATATCGCAGAAGAAGAAACGAGACTTTGAGAGGCCAATGacattgcttttttgttgttgttgtttttttccttgccGATTGCATTTATACCAAAGTTTCAGCGTTTATGCTTTGCTGTGGCAATATTCATAAAATGCTACTTGTTGCTGTTTTCAATCTCGtttctttgtaaaatgtatttttcaatgttaATTAAGTGTACATTCTGTAAAGCATGTGTAAAGTACatttgtttcttgaaatgtaGCTTGTCCttgaaacaataaatacaagtatcaaCATTGG

Function

GO: NA

KEGG:

id description
K24609 LRIG2; leucine-rich repeats and immunoglobulin-like domains protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013728 True 6452 mRNA 0.47 15 40445649 40467813

Neighbor

gene id symbol gene type direction distance location
AMCG00013726 NA coding upstream 104331 40327898 ~ 40341318 (+)
AMCG00013727 LOC106567158,LOC108425528,LOC103366170 coding upstream 174212 40183935 ~ 40271437 (+)
AMCG00013725 plxna2,LOC108425528,LOC103385266,LOC106567158,LOC107594012 coding upstream 325524 40111794 ~ 40120125 (+)
AMCG00013720 NA coding upstream 548481 39789632 ~ 39897168 (+)
AMCG00013724 NA coding upstream 665459 39779219 ~ 39780190 (+)
AMCG00013734 magi3,LOC103386588,LOC104962253 coding downstream 7212 40475025 ~ 40478788 (+)
AMCG00013731 magi3 coding downstream 87864 40555677 ~ 40604675 (+)
AMCG00013735 NA coding downstream 143023 40610836 ~ 40622089 (+)
AMCG00013736 NA coding downstream 195772 40663585 ~ 40665746 (+)
AMCG00013739 pim1,LOC105889771,LOC107734527,LOC107598956 coding downstream 377899 40845712 ~ 40850185 (+)
G46360 NA non-coding upstream 20142 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 32977 40391888 ~ 40412672 (+)
G46138 NA non-coding upstream 1506138 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 1824306 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 1855490 38588879 ~ 38590159 (+)
G46455 NA non-coding downstream 415036 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 735251 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 945547 41413360 ~ 41413600 (+)
G46652 NA non-coding downstream 1377495 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 2027933 42495746 ~ 42499599 (+)
AMCG00013729 NA other upstream 55708 40377732 ~ 40389941 (+)
G46345 NA other upstream 71849 40350652 ~ 40373800 (+)
G46244 NA other upstream 883349 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 1623695 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 1738295 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1960288 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 2177174 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 2182377 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 2572171 43039984 ~ 43044436 (+)
G46862 NA other downstream 2619476 43087289 ~ 43089643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_13466556_13478823 LRIG2 coding CI01000340 null 13466446 ~ 13480433 (-)