AMCG00013731 (magi3)


Basic Information

Item Value
gene id AMCG00013731
gene name magi3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 40555677 ~ 40604675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013731
AAGGTGCTGAACACGGATCTGCGCCATTACCTCAGCCTGCAGTTCCAGAAAGGTTCCCTGGACCACAAACTTCAGCAGGTCATCCGGGACAACCTGTACCTGCGCACCATCCCCTGCACCACGAGACAGCCCAGAGAAGGGGAGGTCCCTGGAGTGGATTATAATTTCATCAGCGTGGGCGAGTTTCGAATCCTGGAAGACAGCGGGCTGCTACTGGAGAGTGGCACATATGATGGTAATTACTATGGCACTCCAAAACCCCCGGCAGAACCAAGCCCAGTGCAGCCCGACCTGGTGGACCAGGTTTTGTTCGACGAGGAGTTCGACACCGAGGCCCAGCGCAAACGCACCACCTCCGTCAGCAAGATGGAGAGGAAGGACAGTGCCGCCcccgaggaagaggaggacgaggagaGGCCCATGGTCAATGGGCTCGTAGAGCACAAGGACTCGGCAGAATGGAGAAAGGCAGTGCCCAGCTACACCCAGTCCAGCAGCGCCATGGATTTCAGAGCGTGGAACTCTCTGCCTCGGGATGACAGTCAGGAGCCGCTGCCCAAGAACTGGGAGATGGCCTATACTGAGACCGGCATGGTCTATTTCATCGATCACAACACCAAAACAACCACCTGGCTGGATCCCCGGCTCGCCAAGAAAGCCAAACCCCCCGAGAAGTGTGAGGATGGAGagCTTCCATATGGCTGGGAAAAGATAGAAGACCCGCAGTATGGCATCTATTATGTGGATCACATCAACCAGAAGACCCAGTTCGAGAACCCAGTTCTGGAGGCCAAGAAGAAGCTGAACCAGGAGGCCCCCACCACCTCGGCACAGCCGGGAGCAGCTCCTCCTGCAGagGAGGGAGTCAGGGGGTTCACCCGTGACCCAGCCCAGTTGCAGGGGACCATGATCCGCACAGCCCTGAGGAAGAGCTCCCAGGGCTTTGGCTTCACCATCATCGGTGGGGATCGTCCTGACGAGTTCCTGCAGGTGAAGAATGTCCTACGAGACGGACCCGCGGCTCAGGACAACAAGATCGCCTCAGGGGACGTCATTGTGGAAATAAACGGCAACTCTGTCCTGGGGAAGACACATGCCGATGTTGTGCAGATGTTCCAGTCCATCGCGGTGAACCAGTACGTGGACATGGTGCTGTGCCGGGGGTACCCGCTGCCCGAGGATACCAGCAGCGAGCCTAGCGGCAGTGACATCGTCACGGCTGTGCCCATCATCAACGGGCAGCCGCTGCTGGTGAAGGGCGAGGCCATGCACAGCTCCCAGGAGCTGCACTTCGTCACCACGGACGCCAGCGGGCGGCAGGTGGTGTCCACTGTGTCCAACGGGCGCTTTCCCGACCCGCAGGACCCCACACTGCTGCAGCCCGAGCTGGTGACCGTTCCCCTGGTCAAGGGCCCCGCAGGCTTTGGTTTTGCCATCGCCGACTGCCCACTGGGCCAGAAGGTGAAGATGATCCTGGATGCCCAGTGGTGCCGGGGGCTGCTGAAGGGCGACGTCATAAAGGAGATCAACCGGCAGAATGTGCAGACGCTGACCCACACGCAGGTGGTGGATATCCTGAAGGACCTCCCGGTGGGCAGCGAGGTGGCTGTGCTGGTGCTGAGGGGAGGTCAGACATCTCCTGTGAAGTCTTTAAAACCAAAACAGGAGATGACAGCCAGCAATGAAGCTCTGCACATACAGGAAGCACCCCCTCAGcctctccccttcccccccaacGCGGTGCGCTCCAACTCCCCGAAACTGGACCCATCCGACCTCTACATCAAGTCCAAAGCCATCCTGGAGAGCAAGCCCCCCAACACTAGGGACCTGGATGTGTTTATCAAGAGGAGTCAGGAGTCGGGCTTTGGGTTTCGAGTTCTGGGTGGAGAAGGTCCAGACCAGCCGGTATATATTGGCGCTATCGTGCCCCTGGGTGCGGCTGAGAAGGACGGGCGCTTGCGTGCTGGAGACGAGCTCATGTGTATCGACGGTGTGCCGGTCAAAGGCAAATCACACAAGCAAGTCCTGGAGCTGATGACCAACGCGGCACGCAATGGGCAGGTCATGCTCACAGTGCGCAGGAAGGTTGTGTACACAGAGGTGGGCGGTGTCGAGGAGGCCCCGGGTGCCCTGCCCAATGGCTCGCCCAAACTGCCCCGGATCGAGGTGCCCTCCCAGCCGGAGCCAGACTCGTATGACGTCACCCTGCAGCGCAAAGACAACGAGGGCTTTGGTTTCGTCATCCTCACCTCCAAGAACAAGCCACCGCCTGGAGTGATCCCACACAAGATTGGGCGCATCATTGAGGGCAGCCCCACGGATCACTGTGGCAGGCTGAAGGTGGGAGACCGGATCTCTGCAGTGAATGGCCAGTCCATCATGGAGCTGGCACACAACGACATCGTGCAGCTCATCAAGGATGCCGGCAACACCGTCACACTGACTGTAGTGCCGGAGGATGACCACAGCGGCCCTCCGTCCGGCAGCAGCTCGGCAAAGCAGAGTCCAGCGCCACAGCACAGAGCCGTGGGACAGGCCTTGCCGGCTAACCGGGAAGACCGATCTCACACTGAACTGGAAGATAAGAAGGATGCGCTTGCTGATGGCAGGCACTCCTGGGCTGACTACAAGACCCTCCCACTGAGCGAGCAGGGTGTGTTGTGCACTACAGGGGTAAAACAGGGCTGTTTCTTAGTGGAGCTGGAGAGAGGGACCCGAGGGTTTGGCTTCAGTCTAAGGGGAGGGAAGGAGTACAACATGGGCCTTTTCATCCTGCGCCTGGCAGAGGACGGGCCGGCGCTGAAAGATGGCCGCATTCACGTGGGCGACCAGATTGTGGAAATCAACGGGGAGCCAACTCAAGGCATCACTCACACACGGGCCATCGAGCTGATCCAGGCGGGAGGCAAcaaagtgctgctgctgctgaggcCGGGCCTGGGCCTGGTGCCTGACCACAGTAAAATGGATAAAATGAATGTTTCACCCACCAGCTTTCAGAATGAGGTTTCAGCTTCTGAAGAGCCGCTCTCACCGTGGTCATCGTTTAACTCCACCTCCATCTTGGATTCCTCCCCCACCGCTGTGAGAAGAGAGGACCCCCACCACTGGGACGCCACCTCCCTGCCCTCTGGATCGCTTCCGCCCCGAGCCAGTGGGACGGCCAGTCCTGCGGATAGTGACAGGATAGGCCAGAACCCTTCCAGAGACCCGGCCAGCAAAGCCACGGCACCGAAACGAGACCGATCCACCAGTCCTGGAGCTCTGCTTGGTAAGAAGGGTGAGCTTGAGGCTTCTCCCAAGGCCAGGTCTGCCAACCCAAAGAAAACCAGCAGTGCAAAAGCAGACACTAAAGACAGATCGCGTAGCCCAAGAAAGATGGAGAGGAACACTCCTCCCAGCGGCAGAAACCGGTCCGTCAGTCCAGTTGACACCAGAAGCAAGGACAAGAAATCCCGCCATCCAAAAGAGGGAAGGCAGAGGTCCTTAAGCCCAAAGAAGTCTCCCAAAAAGGAACAAGATCCGGTCACTAAGGAGCAACACAGGGTCAGCCAGGtgaagacagacaaacacaaccAGCCTGCCGATaacagagacaggaaacgcAGGGAGGAGCAGCCCAGACACAGAGAAGGCGGACCGGCAGAGAAAGAGTCGGGGAAAAGTGCAGAGGAGTCGGCAAGGAACTCCACCGAGCGCCGGGGAACAGACAACCGAGAGGACGCGGACAGAGACTCCAAAGTGCCACGGTCTCGCTCCCACGCAGGGAAGgacaagacacagaaagagcCGGAGGACGCAGGACGCAGAGATAAAGAGAAGGACAGAGCAGTCGGTCAGGCAAAGGGGAAAGTCACGGATGAGCAGCAcgagaaagataacaggattCCTGCTGCGGCTATAGAAGGCTCTGGCAATGGCATCCCAAATAGCGTCAGGAAAGCCCCCATCACACCGGGGCCGTGGAAGGTGCCCAGCTCTGACAAAATCCAGCCACGAACTGAGAGACTACCTGAGCCAAAGAGTCTGGAATAG

Function

symbol description
magi3 Predicted to enable frizzled binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within positive regulation of JUN kinase activity. Located in cell junction.

NR:

description
PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 isoform X3

GO: NA

KEGG:

id description
K06112 MAGI3; membrane-associated guanylate kinase-related

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013731 True 4038 mRNA 0.59 20 40555677 40604675

Neighbor

gene id symbol gene type direction distance location
AMCG00013734 magi3,LOC103386588,LOC104962253 coding upstream 76889 40475025 ~ 40478788 (+)
AMCG00013728 NA coding upstream 87864 40445649 ~ 40467813 (+)
AMCG00013726 NA coding upstream 214359 40327898 ~ 40341318 (+)
AMCG00013727 LOC106567158,LOC108425528,LOC103366170 coding upstream 284240 40183935 ~ 40271437 (+)
AMCG00013725 plxna2,LOC108425528,LOC103385266,LOC106567158,LOC107594012 coding upstream 435552 40111794 ~ 40120125 (+)
AMCG00013735 NA coding downstream 6161 40610836 ~ 40622089 (+)
AMCG00013736 NA coding downstream 58910 40663585 ~ 40665746 (+)
AMCG00013739 pim1,LOC105889771,LOC107734527,LOC107598956 coding downstream 241037 40845712 ~ 40850185 (+)
AMCG00013740 LOC106925460,LOC103149628 coding downstream 427417 41032092 ~ 41036684 (+)
AMCG00013741 NA coding downstream 435466 41040141 ~ 41041929 (+)
G46360 NA non-coding upstream 130170 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 143005 40391888 ~ 40412672 (+)
G46138 NA non-coding upstream 1616166 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 1934334 38590755 ~ 38621343 (+)
G46034 NA non-coding upstream 1965518 38588879 ~ 38590159 (+)
G46455 NA non-coding downstream 278174 40882849 ~ 40885629 (+)
G46508 NA non-coding downstream 598389 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 808685 41413360 ~ 41413600 (+)
G46652 NA non-coding downstream 1240633 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1891071 42495746 ~ 42499599 (+)
AMCG00013729 NA other upstream 165736 40377732 ~ 40389941 (+)
G46345 NA other upstream 181877 40350652 ~ 40373800 (+)
G46244 NA other upstream 993377 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 1733723 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 1848323 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1823426 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 2040312 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 2045515 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 2435309 43039984 ~ 43044436 (+)
G46862 NA other downstream 2482614 43087289 ~ 43089643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_09618505_09684857 MAGI3, MAGI3A coding CI01000001 null 9618022 ~ 9684857 (-)