AMCG00013744 (tead3,LOC103355928,LOC101066377,LOC108231638)


Basic Information

Item Value
gene id AMCG00013744
gene name tead3,LOC103355928,LOC101066377,LOC108231638
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41154019 ~ 41171939 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013744
CGCAATGAGTTGATAGCGAGATACATCAAATTACGAACAGGAAAAACCCGCACGAGAAAACAGGTCTCTAGTCACATACAGGTGTTAGCGAGGAAGAAAGTACGTGAATATCAAGCAGGTATCAAGGTCTCTAGCCATTTGCAGGTTCTCGCCCGGAGAAAGTCTCGCGAGATACAGTCAAAGCTGAAGGATCAGGCATCGAAAGACAAGGCCCTTCAGAACATGGCGGCGCTGTCGTCAGCACAGATAGTGTCCGCAAGCTTCTGGCCTCCCCCTATACCAGGACAACCTGGACCTTCTCAGGACATCAAACCTTTTGCACAGCCTGGATACCCAATTCAAGGCTCAGTGCCGCCTCCTATCTCCACCTACGAGCCCCTGGCCCCTCCGCTCCCCCCTGCAGCCACAGCTGTCCCAGTATGGCAAGATCGCACAATCGCCTCCTCCAAACTGCGGATGTTGGAATACTCCGCCTTCATGGAGGTTCAGAGGGACCCGGAAACGTACAGCAAGCATCTGTTTGTCCACATTGGTCAGACTAACCCTTCATACAGCGACCCTCTGCTGGAAGCGGTAGATATCCGGCAGATATATGACAAGTTTCCGGAGAAGAAAGGTGGACTAAAGGAGCTTTATGAGAAAGGCCCACAAAACGCCTTCTTCCTTGTGAAGTTCTGGGCGGACCTGAACAGCAGTGTGCAGGACGGTCCCGGCTCTTTCTACGGTGTCAGCAGCCAATACAGCAGTGCCGAGAACATGACCATCACCGTCTCTACCAAGGTCTGCTCCTTCGGCAAACAAGTTGTGGAGAAGGTGGAGACGGAGTACGCACGCATGGAAGGAGGGAGGTATGTGTACCGGATCCATCGGTCCCCCATGTGTGAATACATGATCAACTTCATTCACAAACTCAAGCACCTGCCAGAGAAGTACATGATGAATAGTGTGCTGGAAAACTTCACTATTCTACAGGTTGtaacaaacagagacacacaggagacATTGCTCTGCATAGCATTTGTGTTTGAGGTGTCAACAAGTGAACATGGGGCGCAATATCATGTCTACAGGCTTGTCAAGGACTAAGG

Function

symbol description
tead3 Enables DNA-binding transcription factor activity and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in asymmetric neuroblast division and hippo signaling. Predicted to be located in nucleoplasm. Predicted to be part of chromatin and transcription regulator complex.

NR:

description
PREDICTED: transcriptional enhancer factor TEF-5-like isoform X4

GO: NA

KEGG:

id description
K09448 TEAD; transcriptional enhancer factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013744 True 1088 mRNA 0.51 11 41154019 41171939

Neighbor

gene id symbol gene type direction distance location
AMCG00013745 LOC105889845,LOC107724511,LOC107595435,LOC107665997 coding upstream 19354 41130711 ~ 41134665 (+)
AMCG00013743 LOC107559175,LOC107697025 coding upstream 52758 41090717 ~ 41101261 (+)
AMCG00013741 NA coding upstream 112090 41040141 ~ 41041929 (+)
AMCG00013740 LOC106925460,LOC103149628 coding upstream 117335 41032092 ~ 41036684 (+)
AMCG00013739 pim1,LOC105889771,LOC107734527,LOC107598956 coding upstream 303834 40845712 ~ 40850185 (+)
AMCG00013746 NA coding downstream 4722 41176661 ~ 41197663 (+)
AMCG00013757 csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008 coding downstream 244201 41416140 ~ 41424335 (+)
AMCG00013754 LOC107559161 coding downstream 281248 41453187 ~ 41462956 (+)
AMCG00013753 NA coding downstream 295093 41467032 ~ 41483376 (+)
AMCG00013758 NA coding downstream 312373 41484312 ~ 41504467 (+)
G46455 NA non-coding upstream 268390 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 728512 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 741347 40391888 ~ 40412672 (+)
G46138 NA non-coding upstream 2214508 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 2532676 38590755 ~ 38621343 (+)
G46508 NA non-coding downstream 31125 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 241421 41413360 ~ 41413600 (+)
G46652 NA non-coding downstream 673369 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1323807 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1520267 42692206 ~ 42692546 (+)
AMCG00013729 NA other upstream 764078 40377732 ~ 40389941 (+)
G46345 NA other upstream 780219 40350652 ~ 40373800 (+)
G46244 NA other upstream 1591719 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2332065 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2446665 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1256162 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1473048 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1478251 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1868045 43039984 ~ 43044436 (+)
G46862 NA other downstream 1915350 43087289 ~ 43089643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000115_02124660_02136912 TEAD1B, TEAD1A, TEAD1, TEAD1.S coding CI01000115 null 2124307 ~ 2138261 (+)