AMCG00013745 (LOC105889845,LOC107724511,LOC107595435,LOC107665997)


Basic Information

Item Value
gene id AMCG00013745
gene name LOC105889845,LOC107724511,LOC107595435,LOC107665997
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41130711 ~ 41134665 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013745
ATGGACCCGTCCTCTATCCAGGGCTCAACGTTGGGCCCAGGGGGAGCCGCCACCATTGCGTCCAACGAGTGGAGTGCGAACGGCAGCCCAGAGGAGGGGCGGGAGGATGGGGGCGACGGGCTGGACAAAACCATGGATGGGGACGCTGAGGGGGTGTGGAGTCCCGACATCGAGCAGAGCTTTCAGGAGGCACTGGCCATATACCCCCCCTGTGGCAGACGCAAGATCATTCTCTCCGATGAGGGAAAGATGTATGGCCTGGAAAGAGTCCCACATTCCAATCATTTTTCCCCCGCTAGTGAGGGACAGGCATTCCTCAGCGGCTCAGGCCCAGCCTACGGCCCTGTGACAGGAAATATAATCCTGATGCGACAGAAAGGGAAGGTTTGTTTCAACGGCCAGGCATTTTGTCCTTTTGTGGAAGTGCACAGCGGCGAGCTCAGGGCGGTTCTCTGTGCGTCTCCTCGGCGGCTATCCCCTTTCACACTCGACGAGATAAACCAACCTCCCTCCGAGACACTGgcaccctcctcctctctcagacCCTCGACCCTGCCAATATCGGTGTCATGA

Function

NR:

description
PREDICTED: transcriptional enhancer factor TEF-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013745 True 573 mRNA 0.59 3 41130711 41134665

Neighbor

gene id symbol gene type direction distance location
AMCG00013743 LOC107559175,LOC107697025 coding upstream 29450 41090717 ~ 41101261 (+)
AMCG00013741 NA coding upstream 88782 41040141 ~ 41041929 (+)
AMCG00013740 LOC106925460,LOC103149628 coding upstream 94027 41032092 ~ 41036684 (+)
AMCG00013739 pim1,LOC105889771,LOC107734527,LOC107598956 coding upstream 280526 40845712 ~ 40850185 (+)
AMCG00013736 NA coding upstream 464965 40663585 ~ 40665746 (+)
AMCG00013744 tead3,LOC103355928,LOC101066377,LOC108231638 coding downstream 19354 41154019 ~ 41171939 (+)
AMCG00013746 NA coding downstream 41996 41176661 ~ 41197663 (+)
AMCG00013757 csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008 coding downstream 281475 41416140 ~ 41424335 (+)
AMCG00013754 LOC107559161 coding downstream 318522 41453187 ~ 41462956 (+)
AMCG00013753 NA coding downstream 332367 41467032 ~ 41483376 (+)
G46455 NA non-coding upstream 245082 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 705204 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 718039 40391888 ~ 40412672 (+)
G46138 NA non-coding upstream 2191200 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 2509368 38590755 ~ 38621343 (+)
G46508 NA non-coding downstream 68399 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 278695 41413360 ~ 41413600 (+)
G46652 NA non-coding downstream 710643 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1361081 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1557541 42692206 ~ 42692546 (+)
AMCG00013729 NA other upstream 740770 40377732 ~ 40389941 (+)
G46345 NA other upstream 756911 40350652 ~ 40373800 (+)
G46244 NA other upstream 1568411 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2308757 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2423357 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1293436 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1510322 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1515525 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1905319 43039984 ~ 43044436 (+)
G46862 NA other downstream 1952624 43087289 ~ 43089643 (+)

Expression


Co-expression Network