AMCG00013746


Basic Information

Item Value
gene id AMCG00013746
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41176661 ~ 41197663 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013746
GAAGAATCTTGATTCAGTAGCTTGAGAATCTAAATTGACCCAGATCAAGTAAGATCTAGAGTCAGACTGTATTGCAACAACACTGTTCTCCTGTATGAGTTTCATCTACCCCCAACTCTCCCCTCTCTTCCTTTTGACCTTGAAATTAATCTTTCTCACGATTCTTAAGAGTTTTAGAGGTCATGTGCTTCTTCTTTTGTTACCCCCCTTCCCCCCTTTCAGTAAGTCAGAGTATGTCGAGCCTTCGCTGGCTCTAACGCAGAAAGTGGGATGGGAGAGCTTTTGAAACCACAAACTTTTATTAGCGGAAAGTGGCTTACTGACATATAAATAACACTGCAAGGAGCGTCATAGAAGAAGCCTTTTGCAGGCTGTTTTAAGAGCATCCTGCATCCCCATTCTGCCTCATCATTTGTCTGTAATCTGCAACTAAGGGGAAACACACCCACAGTTCAGACTGGCCGGGATATGAAAACAATCTGCATTTTATTGAGAACGGGCAGTGTGCACTTTGAGCAGTGTCAGCAGGCTGGGCGGAGAGGGGAGCAATTCCTCGCTGATACTGCTGACCACATCCTCGCAGGCTCCTGCTCAGAGACGCTCAGGTTTTAGAGGTTCGGCTCCTGTCCTATTGCCATGCTGACCAGCCCGGTCAGACTGCACGTGTTCTCCCTCAACTGCTGGGGTATCCGATACCTCAGCCAGCACTGCAGGGAGCGCTATGAGATGATCGGCGAGttactgcagagagaggggtATGACGTTGCAATGCTGCAGGAGGTGTGGAGCGAGAAGGATTATACATTCCTGAAGAAAAGACTGACGTCCAGCCATCCCCATTCTCATTACTTCAAGAGtGGAGTAATAGGAAGCGGACTGGCTGTGTTCTCCAGGCATAAAATCCATGATGCGTTCCTCTACCGATATTCCTTAAATGGTTATCCCTACATGGCCCACCACGGGGATTGGTTTGGAGGGAAGGCAGTGGGAATGGTCGTGTTAAACATCTGCGGGATGGTGGCTCATGTCTATGTTACACACCTGCATGCAGAGTACAGCAGGGATAAGGATACATACCTACCTCACAGAGTTGTCCAGTCCTGGGAGCTGCTGAACTTCATTCGTCACACCGCTGGCTGTGCAGATCTGGTGATTTTAGGGGGGGATCTGAACATGCACCCACAGGACCTGGGCAATCGGCTGCTGCGTGGCTACACTGGCCTCCGGGACGCCTACACTGAAGCCGAGAAGTTTGATGGCTGTGAAGAAGGCATCACGCTTATTGCCCAGAATCCGTTCATCAATAAGAAAGAGCTGGTGCCTTTTGAGAAAGGTGTCCGAATCGACTACATTCTCTTCAAGTATAGGAAGAGGATCCacagcagaaaaagaaaaagctgtgaCAATGTTGCTTGGCCAGAAACCAGCGGGGTCCATTTCAATGCAGTTCCAgAAGTGCTACCTGCCCTGGTGGACATGGTCACTGAGGCGAGGACAGAGGTGAAGGTGGGGCTGCACTGCGTCGAGAGGATGCGCTACAGTGCGGCCCGCATGGGGGTGATGGGCCTGGccttgctgctgctggagctggccATAGCGCTGGTGCCCTGGCTGGCCCTGAGCGTGGAGCAGCCTTTCCCCAGGGCCTCCTTCTACCTGCTGGGGCTGCTGTGCTTCGCCACCCTGCTGCTCACCCTGGTACTCTACATCTTCTACACCACCCAGGTCAAGGCTCTGCAGGGGGCTGAGGACCAGATGAGGCTGGCAGTAGGCGGCCTGCAGGAGAGACTGGAAGGCCGCCCGCTGTGCCAGCCAGGAGCCCCCAATAAACCATCTGACAGCCCTGTCTCCTGAACCCATAGCTGGGAGAAGACTGGTTCCATTTCATTGATTGTCCTCAATTGCCGTCCGGCTCACAAAGCAATCCATCTGGTTCCATGTACAgaactgaaagcaaaacatcTCGGAGCTCCGCACAGTGAATCAGCTGCTGTGAGGAGGAGGATGGGACTACAGCAACAGTAATCTCCATTCTGACTTCCACACTCCATTCTCTGAGTTGtctgaatacatttctgtatgtatgtatgtatgtatgtgtatatatatatatatgtgtgtgtgtgtgtatgtgtgtgtataaatttGATCTCACTCCACTATTGGTTCGGTGATTTTGAGaagaagaaattaaagcacagatgATAAAACTTGTCTTGAAACCTGCCTTCGGGAAGGCTTTGTCACACATGGTTGACCATTCCCTTCAGTTTAGTGTTTTAGAAACAAAAGAAGGACCAGCAACGGTTTGAGACGGTTAGCTGAAAGGATTGAACCTGGCAGCAGGAGCTCAAGGTAAATGATGTGGTTTGGATTGAGATGAAGCAAGCAAGAACATCTtttctgtctatttttaaacatttttatttaattaatttgttttaagccAGCAATGTATGCTTAGAATAATTGTTCTTAAGAGTAGTTCACTTACTGTAAAGCACTTACTGTAGCCCAATCTATTTTGGTTCATCCTGTTTCTTAATAAGTTACAGTGTTCTTGTATTTAGAGAACAGAGATGGAAGTTTCCTCTTAAAATTGGATATGTAATGCAGGCATCTGTAATGACACTGCATCCTTCAGATGTTAACTCAACATGGAAGAGCTAGAGAATTTGAAATTAAGTCAgtcaagaaatatatattttaaagaacatattgTGTGGACTTGACACGTATTTGGATAGAGGAATGAGGTTGAAAATGTATCCAAAGCCTCATCATCAACcaaatatctctctctcactctagctatatacatatacatacacagagacacatatatatagtaatcTGCAAAAGCTTTGTAAAAACAAAGCTTGAAGTAGATCCACAGTTATAATGATCTAACTTGATCTAATGGAAGAcctcaaaagaagagtgaaaatggatgatacattttgatgaaacagcatgctgttgaaaggaaatccaACCCTTTGCCTCAGGAGAAAGATCTGGTGAAGATGTTACAATGGTAATGGCCAGACACATTACAAGAAgtacagaccaaagatggattAAGGAAGGTGTAGAATGGagcccaagagattaaaaaaaaaaccaaggagaccacatagaagatgggaagatgaaatagatttgctggtgtgacctggaaaagataAGCTATGAATGGAAACATCtgtcatccagcagtggatcaacaaaTGATGATGGTGAGATCTATATATCTATCATCTTATCAATGTATGTCCATGTAGTTACTCTCAtcacaactatatatatataacttatacacacacaaacatagatGGACACAGATCTATTTACACTGCAATCCAGACTAAACTgcaacttttttcccctcacgtTTTGCAAGCCCTCTGATCCTGATTGAATCTGATAGTACTGGTTGAGGAAATGGGCCATTTATTAAGTACTGTATATGTCTTAGTATTTTTATGCGATTCAATGAGTTGTATTAAATATTGACAAGACATACCACATTTAAACGTTTGGCTGTTTATATTGCTATAGACACTGGTATATATGTGTAAAAGATGATTTGGCTATGTTTTCTAACTCCTGCTGTGTGTgcttaaaagagaaaaatatacattcctCTTTTCCATACTTCAAATTGTTCTAAAAAAATGTACCCATACGATTGTATGTTCTATACTAAATAGTTAACAGGCTTAACACGTAATTTTCTCTCACTGAAATATCAGGTGTTTACGCTATGTATGTACAACACTATGATATATGTATCcattatgttttgtgttatttagaAATGATAGATTCCTTGAAACTTTTAACATGTATGAAAACCTGTATCTAAtctttcaaattatgttttttcctaAATAAAATGAGTAGAACAGCAATGTAGTTATAACAACAAAttttatgaataaatgaa

Function

GO: NA

KEGG:

id description
K12351 SMPD2; sphingomyelin phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013746 True 3949 mRNA 0.43 11 41176661 41197663

Neighbor

gene id symbol gene type direction distance location
AMCG00013744 tead3,LOC103355928,LOC101066377,LOC108231638 coding upstream 4722 41154019 ~ 41171939 (+)
AMCG00013745 LOC105889845,LOC107724511,LOC107595435,LOC107665997 coding upstream 41996 41130711 ~ 41134665 (+)
AMCG00013743 LOC107559175,LOC107697025 coding upstream 75400 41090717 ~ 41101261 (+)
AMCG00013741 NA coding upstream 134732 41040141 ~ 41041929 (+)
AMCG00013740 LOC106925460,LOC103149628 coding upstream 139977 41032092 ~ 41036684 (+)
AMCG00013757 csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008 coding downstream 218477 41416140 ~ 41424335 (+)
AMCG00013754 LOC107559161 coding downstream 255524 41453187 ~ 41462956 (+)
AMCG00013753 NA coding downstream 269369 41467032 ~ 41483376 (+)
AMCG00013758 NA coding downstream 286649 41484312 ~ 41504467 (+)
AMCG00013760 NA coding downstream 351763 41549426 ~ 41552570 (+)
G46455 NA non-coding upstream 291032 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 751154 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 763989 40391888 ~ 40412672 (+)
G46138 NA non-coding upstream 2237150 38934463 ~ 38939511 (+)
G46035 NA non-coding upstream 2555318 38590755 ~ 38621343 (+)
G46508 NA non-coding downstream 5401 41203064 ~ 41204149 (+)
G46538 NA non-coding downstream 215697 41413360 ~ 41413600 (+)
G46652 NA non-coding downstream 647645 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1298083 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1494543 42692206 ~ 42692546 (+)
AMCG00013729 NA other upstream 786720 40377732 ~ 40389941 (+)
G46345 NA other upstream 802861 40350652 ~ 40373800 (+)
G46244 NA other upstream 1614361 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2354707 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2469307 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1230438 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1447324 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1452527 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1842321 43039984 ~ 43044436 (+)
G46862 NA other downstream 1889626 43087289 ~ 43089643 (+)

Expression


Co-expression Network