AMCG00013754 (LOC107559161)


Basic Information

Item Value
gene id AMCG00013754
gene name LOC107559161
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41453187 ~ 41462956 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013754
cggctgtgtgtcagtgcaggaGAAATCTGCTGCTTCTATTAATACCACCCAGTGACGAGCAAGGGAGACAATGGGAACCGGGGTTAAATAGTCCGGGAGCATTCTTTCACTGCATCTTTGTTCTGTCTGCTGCCTGTCCTCTCCGCTGCACATAAAGTCTGAACCTCCTCTGCCAAAATGCCGGAGCATGTCCAGAGAAAGTCCAAGATTACTGCTTCACGCAAGCTTATGCTAAAGAGCTTGCTGTTGGCAAAGGCTAAAGAGGAGTTGGAACAGGAGATTGTGGacaaagaggaggagaaggagagataCCTGAATGAGAGGGTGCCACCACTGCGCACCAGTGGAATGTCCTTACGTGAGCTTCAGGAGCTGTGCCAGGAATTGCATGCTAAGATTGACGTAGTGGATGAGGAGCGATATGACATTGAGGCTAAAGTCATTCACAACACCAGAGAGGAGAGACCTGTGGAGGTGGGAGACTGGAGGAAGAATGTGGAGGCTATGTCTGGGATGGAGGgcaggaagaaaatgtttgatgcTGCAAAAACGGCCCCACCGCAGTAAGAAGataaTCTGAAGGAATTGAATACGGACTTGAATTTACACCTGCACATCTGCTAGTATTTTTAACAATCAGTGgtgatacatttcatttttcagtgtctattttattttttccataaacaTGTGATCTTAAATTTATGACAAAGAATTCTGGAAATGCTTTAACAAAATCCATTGGTCCTCTTGTCAATTCCATCAAGCAAGGATTTTTATGTAAcccagtgtttttgttgttgtttaacatTTCTGCTCCTATAATTCCTCGGATAGGACTGAGGACTGAATGTTTGAGTTAGAGGCTATTCTACCCGTTTGTGATTTGGTAGGGGCCCTCTGTAAAACTGACTGTCCAACTTTCATGTGAGTTCAATAGACCTTCCTTTTCATATGACATGGACATGTGTAAAATCTGATGTTTATAATTTTTGAAAGAACCAAGTGCCATTCTGTGTGCATTTTGCCTGCCAAGTGTGAGGTATGCAGTAGAATCAAAGGCTCTGTAGTCTTCTAATAAAGTGCACGTCAATacagcatttgaaaaataattgtaatcttTGAGTTGCTCTTCTAGGGTTaaagctaaaacaaacaaatatggaaCCCCACcccaacaaaataatacaaatgtaatgattataCAAAATTAAGACTTGGAAGCTTTTTCCAAATAAATCCATTGCCTTTGATCTATTCTGaaagtttttttctgttgataGCTGGTATTGATTGATCTAGATAGCTAAATAGTTTCCTGGTATGCCCCTAGAAATGAGGTATGtgaaatttactttttaaaggtGGTGGTTCAGATAAGAGATctagtaaaaatgtattgtatttgaaaattagCTGACACATACAATTTTTCCATGATCCCCAAACTCTCTTTATCATCAGAGATTCATGGTCTATGTCAGCTTTTAAAGGAATTCTATATACATGTTTTCCCTCTAAAAAAAGTGTTAACCTCTCTTGCTTTCAGATTGCCTACACTAATAAAACAGTTAGGCACTAGATGTGTCTTTAAAGGTGACCGCCAACTTGTAGAATGCAAACAAGGCAATAAACGAAGCTACACATGCC

Function

NR:

description
PREDICTED: troponin I, slow skeletal muscle-like

GO: NA

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013754 True 1650 mRNA 0.40 7 41453187 41462956

Neighbor

gene id symbol gene type direction distance location
AMCG00013757 csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008 coding upstream 28852 41416140 ~ 41424335 (+)
AMCG00013746 NA coding upstream 255524 41176661 ~ 41197663 (+)
AMCG00013744 tead3,LOC103355928,LOC101066377,LOC108231638 coding upstream 281248 41154019 ~ 41171939 (+)
AMCG00013745 LOC105889845,LOC107724511,LOC107595435,LOC107665997 coding upstream 318522 41130711 ~ 41134665 (+)
AMCG00013743 LOC107559175,LOC107697025 coding upstream 351926 41090717 ~ 41101261 (+)
AMCG00013753 NA coding downstream 4076 41467032 ~ 41483376 (+)
AMCG00013758 NA coding downstream 21356 41484312 ~ 41504467 (+)
AMCG00013760 NA coding downstream 86470 41549426 ~ 41552570 (+)
AMCG00013756 NA coding downstream 111022 41573978 ~ 41587939 (+)
AMCG00013755 NA coding downstream 131861 41594817 ~ 41604943 (+)
G46538 NA non-coding upstream 39587 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 249038 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 567558 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 1027680 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 1040515 40391888 ~ 40412672 (+)
G46652 NA non-coding downstream 382352 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1032790 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1229250 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 1230706 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 1240700 42703656 ~ 42792219 (+)
AMCG00013729 NA other upstream 1063246 40377732 ~ 40389941 (+)
G46345 NA other upstream 1079387 40350652 ~ 40373800 (+)
G46244 NA other upstream 1890887 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2631233 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2745833 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 965145 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1182031 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1187234 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1577028 43039984 ~ 43044436 (+)
G46862 NA other downstream 1624333 43087289 ~ 43089643 (+)

Expression


Co-expression Network