AMCG00013757 (csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008)


Basic Information

Item Value
gene id AMCG00013757
gene name csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41416140 ~ 41424335 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013757
ATGGATAGACCCGCCCTCTTCACTGGTGTGGTGTGCAAAAGTGTGACTCCACTGGTCTCTATTAAACTGGGGAAGCTGTGCAGCCCAGAGGTGCCACTCCTCACAACAGCTGGAGATACACAGCGACAGCCGAGAGACTGCCCAGGGACTCCAGACACTTTAGCTTCCAATCTCATCACTGCATACAGGAATCTTAGTCTGCTTTGTTTTCCACACAGGATGCCTTTTGGGGGAGGAAATAAGTGTGGCCTGTGCCAGAAGACGGTGTATTTTGCCGAGGAAATGCAGTGTGATGGCAAGAGCTTCCACAAGTCATGCTTTCTGTGCATGGTGTGTAAGAAAAACCTGGACAGCACAACTGTGGCAGTTCATGGAGACGAAATCTTTTGCAAGGCTTGCTATGGCAAGAAACATGGACCAAAAGGCTATGGTTATGGACAGGGCGCGGGTACACTGAGCATGGACAAAGGGGAAGGCCTGGGTATCAAATCTGAAGACCCTATGCCCCACCGCCCCACCACCAACCCCAACCCTTCGAAATTTGCTCAGAAGCTGGGGAACTCCGAGGTGTGCCCACGCTGCAGCAAGTCGGTCTACGCAGCAGAGAAAGTAGTCGGAGCTGGAAATGCCTGGCACAAGAGCTGCTTCCGCTGTGCAAAATGTGGGAAGGGCCTGGAGTCCACCACCTTGGCAGACAAGGATGGAGAAATTTACTGCAAAGGTATCAATCTTCACTCACACAAAGACTATAACTGTGCCTGttgccaaaaaacataa

Function

symbol description
csrp1 Enables RNA binding activity. Involved in platelet aggregation. Located in nucleus.

NR:

description
PREDICTED: cysteine and glycine-rich protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013757 True 777 mRNA 0.51 6 41416140 41424335

Neighbor

gene id symbol gene type direction distance location
AMCG00013746 NA coding upstream 218477 41176661 ~ 41197663 (+)
AMCG00013744 tead3,LOC103355928,LOC101066377,LOC108231638 coding upstream 244201 41154019 ~ 41171939 (+)
AMCG00013745 LOC105889845,LOC107724511,LOC107595435,LOC107665997 coding upstream 281475 41130711 ~ 41134665 (+)
AMCG00013743 LOC107559175,LOC107697025 coding upstream 314879 41090717 ~ 41101261 (+)
AMCG00013741 NA coding upstream 374211 41040141 ~ 41041929 (+)
AMCG00013754 LOC107559161 coding downstream 28852 41453187 ~ 41462956 (+)
AMCG00013753 NA coding downstream 42697 41467032 ~ 41483376 (+)
AMCG00013758 NA coding downstream 59977 41484312 ~ 41504467 (+)
AMCG00013760 NA coding downstream 125091 41549426 ~ 41552570 (+)
AMCG00013756 NA coding downstream 149643 41573978 ~ 41587939 (+)
G46538 NA non-coding upstream 2540 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 211991 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 530511 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 990633 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 1003468 40391888 ~ 40412672 (+)
G46652 NA non-coding downstream 420973 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 1071411 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1267871 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 1269327 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 1279321 42703656 ~ 42792219 (+)
AMCG00013729 NA other upstream 1026199 40377732 ~ 40389941 (+)
G46345 NA other upstream 1042340 40350652 ~ 40373800 (+)
G46244 NA other upstream 1853840 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2594186 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2708786 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 1003766 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1220652 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1225855 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1615649 43039984 ~ 43044436 (+)
G46862 NA other downstream 1662954 43087289 ~ 43089643 (+)

Expression


Co-expression Network