AMCG00013758


Basic Information

Item Value
gene id AMCG00013758
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 41484312 ~ 41504467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013758
CAAACAGCCACTTGGgttataaataaagacaatagGAACACCTCAATCACTCTGACAGAACCCCACCATGACATCTGAGGGCCTGTCACATGATTCTGAGATGTTTTTAAAGCGTATGATTTTTCAGGAGCTTTCACACAAGCTGGAGGATCACTATTTTCTCAAGTCTCTCTTACTTCAGAAGTTCCTGAAGAGGCGGCAGAGGAAGCCACAGcaggggaagaggaggagaaggagaccACACAGGAAAATGacGCTGGAGAAGAACATgaaggaggagGATATCCACCGAAAACGCATGGAAAAAGATCTAAACGAGCTGCAGACCCTGATTGAAGCCCACTTTGAGAATCGCaagaaagaggaggaagaaCTCATCAGCCTAAAGGACCGGATTGATCAGCGTCGGTCTGAAAGAGCCGAGCAGCAGAGGATacgtgcagagagagagaaagagcggCAGAACAGAGTGGCTGAGGAGAAAGCAaggaaagaagaagaggagaacAAGAAGAGAGCCGAAGAAGAtgccaagaagaagaaaacccTCACTAGTATGCATTTCGGAGGTTATCTTCAGAAGACTGAGAGACGGAGTGGAAAGAAACAGACtgagagggagaagaagaagaaaatcctGGGCGACCGCCATAAACCACTGAATATTGATGACCTGAGTGAAGAAAAACTGAAGGAGAAGGCAAGGGAGTTGTGGGAAAAGATCTACCAATTGGAAGCTGAGAAATTTGACCAGCAGGACAAATTCAAGAAGCAGAAGTATGATATTAAGGTTCTGAGAAACCGAGTTAGCGACCACCAGAAAACTTGTAAAGGGGGACGAGCAAAGACTAAAGGTGGTCGATGGAAGTAGCAAAGTACACAGTCCTTTGCCTTGGATTCTTTGTGGAAGTCTGCCAGAGTGCCACTGAACCCCAGCCTCCAATGTCCCTCCACATACTCTGAGAGAAGGGCATCATATTGCAGTGTGAATTTCACTAGTTGAGCCAATTCTTGTCTTGTCAGTGCTCGCTTTGCTACTTTCTAGTGTTATACTGCCTTGttgttatgttatgttgttatgttctttacccattcattaaaatatccctgtaaataaaagcacacaataATGCCCAATAAACTGTGCCAATAAAAATTGTAAA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0048793 pronephros development biological_process
GO:0055009 atrial cardiac muscle tissue morphogenesis biological_process
GO:0055010 ventricular cardiac muscle tissue morphogenesis biological_process
GO:0048845 venous blood vessel morphogenesis biological_process
GO:0045214 sarcomere organization biological_process
GO:0010749 regulation of nitric oxide mediated signal transduction biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0060840 artery development biological_process
GO:0005861 troponin complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013758 True 1163 mRNA 0.45 10 41484312 41504467

Neighbor

gene id symbol gene type direction distance location
AMCG00013753 NA coding upstream 936 41467032 ~ 41483376 (+)
AMCG00013754 LOC107559161 coding upstream 21356 41453187 ~ 41462956 (+)
AMCG00013757 csrp1,LOC107385034,LOC102222871,LOC103134604,LOC106921008 coding upstream 59977 41416140 ~ 41424335 (+)
AMCG00013746 NA coding upstream 286649 41176661 ~ 41197663 (+)
AMCG00013744 tead3,LOC103355928,LOC101066377,LOC108231638 coding upstream 312373 41154019 ~ 41171939 (+)
AMCG00013760 NA coding downstream 44959 41549426 ~ 41552570 (+)
AMCG00013756 NA coding downstream 69511 41573978 ~ 41587939 (+)
AMCG00013755 NA coding downstream 90350 41594817 ~ 41604943 (+)
AMCG00013759 NA coding downstream 117297 41621764 ~ 41637225 (+)
AMCG00013761 NA coding downstream 260277 41764744 ~ 41787394 (+)
G46538 NA non-coding upstream 70712 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 280163 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 598683 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 1058805 40416632 ~ 40425507 (+)
G46355 NA non-coding upstream 1071640 40391888 ~ 40412672 (+)
G46652 NA non-coding downstream 340841 41845308 ~ 41893174 (+)
G46701 NA non-coding downstream 991279 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 1187739 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 1189195 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 1199189 42703656 ~ 42792219 (+)
AMCG00013729 NA other upstream 1094371 40377732 ~ 40389941 (+)
G46345 NA other upstream 1110512 40350652 ~ 40373800 (+)
G46244 NA other upstream 1922012 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 2662358 38811945 ~ 38821954 (+)
AMCG00013672 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC107572204 other upstream 2776958 38656596 ~ 38707354 (+)
AMCG00013770 NA other downstream 923634 42428101 ~ 42446480 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 1140520 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 1145723 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 1535517 43039984 ~ 43044436 (+)
G46862 NA other downstream 1582822 43087289 ~ 43089643 (+)

Expression


Co-expression Network