AMCG00013776 (uhrf1bp1,LOC102796170)


Basic Information

Item Value
gene id AMCG00013776
gene name uhrf1bp1,LOC102796170
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42665282 ~ 42689203 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013776
ATGACGGGTGTGATTTGGGGTACCGTGCTTTTCCTTGACACCATCCTGTCGGTCAGCGTTGTGCGTCgGTTCGCCAAGAACCTGTCCCCCGACAAGATCAACCTGAGCACCCTGAAGGGGGAGGGCCAGCTCTCCAACCTGGAGCTGGATGAAGAAGTCCTGCAGAACATGCTGGATCTGCCCACCTGGCTGGCAGTCACCCGCGTCTACTGCAATAAAGCTGCCATCAGGATACAATGGACAAAGCTGAAGACCAGCCCCATCTGCTTGTTCCTAGACAAGGTGGAAGTGGAGATGAGGACCTGTGAGGAGCCACGGTCCCCCAATGGCCCATCCCCCATCGCCATCACCGCAGGGCAAAGTGAGTACGGCTTTGCTGAGAAGGTGGTTGAAGGCATGTCCGTTGTCATCAACTCCATCACCATCAAGGTCCAGGCCAAGGCCTTCCACGCCTCCTTCGAGCTCTGGCAGCTCCAGGgcaacagcctgaaccccaagtGGCAGCGCAGTGACCTCCGCTACACGCGCATCACTGACCCCAAGAGAGGAGAGCTGAAGGCCATGATCCACTACGCCAAGTCCCTCAGCGAGGCCATCGAGAAGTCGGCCCAGCAGCGTAAGAACCTGGCCTCAGACACCCTGCAGACGGCGCCCACTTCGCCAGGATCCCACCCCCCCTGGGCAGAACCCGCCCCGCCCCCAAGTGGCACCCCCAGCACGCTCAGCCAGTACTTTGACCTCCATGATGTCAAGGAGTCGTCCTACCACACCCTGATCTCCCGCCTGGACCTGCACATCTGCAATGACAGTTCTTCCCAGAACCCTGatgagCCTCGGCCACGTGGGTCCACTGGGGCCATGCAGTTGACCTTCCGAAAGCTGGGCTTCGACTACTACCCCTTCCACAAGCCTGGTGATGGCTGCTGCCACTGGGAGCGACACTGTGGTGCCATGGAGTCTCGGGCACAGTGGGCAgagaagctgctgcaggagtTCCAGAGGTGGGCGGAAGGGGTGGGAAGCCTGGGGTCACACATGGGCTCCCCCACTGCTGCCCGGGACTCCCCCGCCAAGCGAGCACCAGcTGACGGAGTGCCCATGCCACAGGCCAGTCCCCCGGACCGAGCGCAGACCCCCCGCCGGACCCCAGCCGTGGCCGCCGCCCCACCTTCCCCCCACAGGCCCCCCTGGAAGAGGCTGCGCTCCAGCTGTGTGGTGGTCAGAGTGGATGACCTGGACATTCATCAGGTGTCCACTGGGGGGCGTCACAGCAAGAAACCCCAGTCCCTGGTGTCCTGTAACCGGAAGTCCCTCCGCCTCCCGGACAATGTGGCAGCCATCCACTTGCAGTTCACAGAGTACTACTTCCCTGACAACAACACACTGCCTGTGCCATGCTCCAATCTTTACGCCCAGGTGAATGGTCTCCAGCTGTGCCTGGACCCACCCAGCCTGCTGTGGATGAACCTGTTCTCCCAGGGGCTGCTGTGCACCCTGGAGCAGGTCAAGGCCTTCTACCACCTGCAGGACTCCAGGAAGGCAGAGGAGCACGTGGATGTGCGCATGGACGCCTCCCAACTGAAGcTGGTAGTCCCTCTGGAGTCTTCCATCCTGGACCACCCAGATCGGCCCCAGACCCTCCGTGTCCATGCCTCCCAGGCCACCCTGACCAACACTAGCCACTCCCCCCACAGCACCCGCAGCAACCTGCAGGGCACCTACCACTCCTTTGACTCCCACCCCTTCTTCCAGCCCTCGGCTACACCCAACTTTCCAAAGGACGAGGCCAGCTTCCACCCCCTGCCCCCCGCCTTCCTGCACCATGCCCTGCAGGTGGACGGCCCCCTGGACCCCAAGTGGGTGGAGAAAACCTCCCGTGCCCAAGACGTGTGGGCCCTGAGCCTCTCCAGACTGGCGTTAGATTTTGAAGGGGCGCGGAGGGGGCCCAAGGGGAAGCCCATGCCCTTTGTGGAGCCCTTTGCCATGTCCCTCTGGATGTGCCACCCAGACGCTTTCCAGGTCTCTCATGCACCCACGTTCCCCTCTCTGCCTCCCAATGGGACGAGGCTCAGGTCCTCGGCCAGCTGCGGAAACCACATCCACTCCACCTTAACCCTGGAGAAACCTGCCAATCATCTCAAGTCCAAGACGGTACATAACCTGGTGGATCTGGGCTCTTTGGAAGAGAAGACCGATGGGGTGATTCCAGAGAAAAATGGGGAGGAGATCCCAGCAGCCTCTATCCATGTCTTGGCTCAGACCATATCCCCGGTGAAGCTGTGGCTGAACCACTACCAGTATGTGGCTCTGCTGCGGATGAAGGACACGCTGGCCCGGCTGGCGGCAGAGCTGGCACGGGATGCCCATCGGGCGGGGGGAAAGCAGGTTGCGACCCCGAGCGTCAGCGTTGGCCTCCTGATGGACAGCGTGGAGACTGGGTTACTGCTGCCACCTGCTACCTCTGAACACGAAGAGGTACGTTCCCCTGAGGGGACGGAGAGCCCCAGTCTGTCCGACTCGGACCTTTCCCCTCTGAAGGAGCTCTGCGGTGTGGTGCTGGAGGACAGTGGGATTGGGCCTCTGTCTGAGAGGGGGGAGCCGGAGGGGCCAGTGGAAGAGGCCTGCGAGGCCATGGAGGAAGGAGTCACCGAGCGGAAGGGAGACATCGAAGACCCGGGCCTCTCCCCGCCACTCTCGCCCCCGCATCGCCCCCTGCAGTCCCGGGATGCATCCTCCTTCAGCCTCGAGGGAGAGCTGGCTAATGCCCTGACTGCCACTAAGGATGCCACCAAGGATGCGCTGAGTGCCTCGCTGGACCTCACCAAAGAGGCGCTGTCCATCACCAAGGATGCCTTCAGCATCCTGAGCCGGGAGAAGATGACTAGCATGCACAAGATGCTCTTCAACGCCCACCCCAGGGAGCCTCAGCCTCGCCTGGAAGAGCCGCCCCCTGTCCTGGGCAACCTGCGCGTGCAGACCATGAAACGCTCGCAATCCCAGCATTCCTTCGAGAGCGCCTCGCTGGACGGCAGCCTCGCCGACGATGGGCTCTCGGTGGACAGCGACAGCAGTGAGAACTTTGTCATCCTGATGGACTCAGAGTCGGGGATGGACTCGATGCGCCTGGGCAGCACTCCCTCTCTGCCCGGTGATACCGGGAGCCGGGGCAGCCCAGCTCCAGGGACGGAGGGAGGGTCGTCGGCTGACCTGAGCAGCTCCCTGTCCCAGAGCACCGAGGATATATCCCAGGACATGGTGTCCGTGCTGCTCCTGCGGCTCAGTTCAGTGGCCTGCGCGGTGGACGTCCGGGGGGATGATATGACTGTGGCGGTGGAGGTCGAGGAACTGGTGACAGAGCAGCTGGGGAACCGGAGAGTGACGCAGCTCCTGAGCGGACAGGCCCCAGTTGCTCCCTCACCCAGCAAGCCCCCTGCCCCAGAGCAGAGGCGGGGCATCAGGGGGGCTCCAGTGGCACGGATGAGGATGGAGATGGGCCCTGCAGCAGCCCGGCACTCCCCTCTCTCTGAGACGTTGGGCTTTCTGGAGATGCGGTTGAGTGGCTGCCATTCCGACCTCCTGACCTCCACATTGGCCACTCTGGGAGCCTTTCTGGAGGATGAGCTGAGCGCTGACGTTCAGCCTATGAGGATCCACATGGAGAACACCACCATCACCCTCAAGGATGATGGGCCCAGGGTCTATCCCACCTCTCCTCAGCCAGTGCCAGTGATCTTTGCTCTGGACCGGATCGTTCTGGAGCGCACCGATGATGGGGTCTTCTGGCTAAGAGGCCGAGAGACGGAGAGTCCTACACAGAGTATCTCCGCTGGGGAGCTGGGCACTGTGCCGGGGAGCGATGCATGCTGGCCGCCTTCTGAATCTATGAATCCTGACACCGCTGATGACAGAGAGCAGAGTCAGAAGCTGCAGTCCCAGCTGGCCGAGACCCAGGCTTCCCTCGCTCAAGCCATCGACGACCGCCAGCACCTCCTGCAGGAGATCAGGAAATACAATCCTCtgtttgacctctga

Function

symbol description
uhrf1bp1 Orthologous to human UHRF1BP1 (UHRF1 binding protein 1).

NR:

description
PREDICTED: UHRF1-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013776 True 4032 mRNA 0.62 20 42665282 42689203

Neighbor

gene id symbol gene type direction distance location
AMCG00013774 pacsin1b coding upstream 95703 42555808 ~ 42569579 (+)
AMCG00013771 nudt3,LOC106566013 coding upstream 177918 42477671 ~ 42487364 (+)
AMCG00013761 NA coding upstream 877888 41764744 ~ 41787394 (+)
AMCG00013759 NA coding upstream 1028057 41621764 ~ 41637225 (+)
AMCG00013755 NA coding upstream 1060339 41594817 ~ 41604943 (+)
AMCG00013780 anks1a,LOC107746333 coding downstream 29490 42718693 ~ 42723943 (+)
AMCG00013782 anks1a coding downstream 44342 42733545 ~ 42738221 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding downstream 96224 42785427 ~ 42814143 (+)
AMCG00013785 scube1,LOC107550129 coding downstream 153372 42842575 ~ 42866909 (+)
AMCG00013786 scube3,LOC106566910 coding downstream 204063 42893266 ~ 42936143 (+)
G46701 NA non-coding upstream 165683 42495746 ~ 42499599 (+)
G46652 NA non-coding upstream 772108 41845308 ~ 41893174 (+)
G46538 NA non-coding upstream 1251682 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 1461133 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 1779653 40882849 ~ 40885629 (+)
G46730 NA non-coding downstream 3003 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 4459 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 14453 42703656 ~ 42792219 (+)
G46798 NA non-coding downstream 288409 42977612 ~ 42980239 (+)
G46814 NA non-coding downstream 309536 42998739 ~ 42999135 (+)
AMCG00013777 NA other upstream 3438 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 16528 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 218802 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2275341 40377732 ~ 40389941 (+)
G46345 NA other upstream 2291482 40350652 ~ 40373800 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 350781 43039984 ~ 43044436 (+)
G46862 NA other downstream 398086 43087289 ~ 43089643 (+)
G46945 NA other downstream 749289 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 2345569 45034772 ~ 45095669 (+)
G47206 NA other downstream 2637455 45326658 ~ 45360882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028710 uhrf1bp1l coding NC_007115.7 CM002888.2 18207655 ~ 18281160 (-)
grasscarp (Ctenopharyngodon idella) CI01000002_01650177_01674596 UHRF1BP1 coding CI01000002 null 1650177 ~ 1674657 (+)