AMCG00013782 (anks1a)


Basic Information

Item Value
gene id AMCG00013782
gene name anks1a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42733545 ~ 42738221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013782
ATGCTGCCCGTCTCCACACAGTGTTTGAGCCCCGGCCCCTGCCCCGGGGTTAACCCCACAGACGCTGGGAACGTCATATTTGCTCCAGGCACTTGTTGGGCATTGTTTCACAGCTTCAGTCCCGGAGGCGGTGCCGAGGAGCTTGGAGCTATTTTTAACCTGAAACGGAACAATGACAATGAGACGGCGCTGCACTGTGCCGCGCAGTACGGCCACTCGGAGGTTGTGCGGCTGCTGCTAGAGGAGCTGACTGACCCCACCATGAGGAACAACAAATTCGAGACGCCCCTGGACCTGGCCGCGCTGTACGGCCGGCTGGAGGTGGTCAAGCTGCTGCTGAATGCCCACCCCAACCTGCTGAGCTGCAACACCAAGAAGCACACCCCCCTGCACCTCGCCGCCCGCAACGGACACCTGCCCGTGGTGGAGGTTCTGCTGGACGCCGGCATGATCATCAACTACGAGACAGAGAAGGGCAGCGCGCTGCACGAGGCTGCACTGTTTGGAAAGACAGACGTGGTGCAGAAACTGCTCAGTGCAGGGATTGACGTGAACATTACGGACAACAGGGGTCTGACGGCGCTGGACACAGTGCGAGAGATGCCCTCTCAGAAGAGCCGAGAGATCGCATCGCTTATTCAGGCTCACATGACAGGAAGTACCAGAGAACACGAGAAGCTTCCACCCCCTCCACCGCCTCCCCCAGGCAGTCAGGAGAACCTGAGTCCCAGGACTATGGGGGAGATGCAGCAGCAGGTGTCAGACCTGATCTCCGGGCTGGCTCAGAGGCCCGAGGAGGAGAGCCCGTACGAGGCGCTGTTCGAGGCCACGTCCTGCCACTCCCTGGACAGCCTGGCCAGTGGCAAGTCCTCGGATCGAGACTCGGGACGACCGGACAGCGAAGGGGGCAAGGTGAGCTGGAAGGAGAGGGTGGGGCGGTGGCGGGGGCACTga

Function

symbol description
anks1a Predicted to enable ephrin receptor binding activity. Predicted to be involved in ephrin receptor signaling pathway; neuron remodeling; and substrate-dependent cell migration. Predicted to act upstream of or within negative regulation of ubiquitin-dependent protein catabolic process and regulation of ephrin receptor signaling pathway. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: ankyrin repeat and SAM domain-containing protein 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013782 True 954 mRNA 0.62 7 42733545 42738221

Neighbor

gene id symbol gene type direction distance location
AMCG00013780 anks1a,LOC107746333 coding upstream 9602 42718693 ~ 42723943 (+)
AMCG00013776 uhrf1bp1,LOC102796170 coding upstream 44342 42665282 ~ 42689203 (+)
AMCG00013774 pacsin1b coding upstream 163966 42555808 ~ 42569579 (+)
AMCG00013771 nudt3,LOC106566013 coding upstream 246181 42477671 ~ 42487364 (+)
AMCG00013761 NA coding upstream 946151 41764744 ~ 41787394 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding downstream 47206 42785427 ~ 42814143 (+)
AMCG00013785 scube1,LOC107550129 coding downstream 104354 42842575 ~ 42866909 (+)
AMCG00013786 scube3,LOC106566910 coding downstream 155045 42893266 ~ 42936143 (+)
AMCG00013787 NA coding downstream 198780 42937001 ~ 42946339 (+)
AMCG00013791 adipor1 coding downstream 327115 43065336 ~ 43069921 (+)
G46734 NA non-coding upstream 37922 42693662 ~ 42695623 (+)
G46730 NA non-coding upstream 40999 42692206 ~ 42692546 (+)
G46701 NA non-coding upstream 233946 42495746 ~ 42499599 (+)
G46652 NA non-coding upstream 840371 41845308 ~ 41893174 (+)
G46538 NA non-coding upstream 1319945 41413360 ~ 41413600 (+)
G46798 NA non-coding downstream 239391 42977612 ~ 42980239 (+)
G46814 NA non-coding downstream 260518 42998739 ~ 42999135 (+)
G46861 NA non-coding downstream 348169 43086390 ~ 43086600 (+)
G46905 NA non-coding downstream 612632 43350853 ~ 43352415 (+)
G46940 NA non-coding downstream 694155 43432376 ~ 43452015 (+)
AMCG00013777 NA other upstream 71701 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 84791 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 287065 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2343604 40377732 ~ 40389941 (+)
G46345 NA other upstream 2359745 40350652 ~ 40373800 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 301763 43039984 ~ 43044436 (+)
G46862 NA other downstream 349068 43087289 ~ 43089643 (+)
G46945 NA other downstream 700271 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 2296551 45034772 ~ 45095669 (+)
G47206 NA other downstream 2588437 45326658 ~ 45360882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000002_01755342_01805760 NA coding CI01000002 null 1754468 ~ 1805772 (+)