AMCG00013785 (scube1,LOC107550129)


Basic Information

Item Value
gene id AMCG00013785
gene name scube1,LOC107550129
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42842575 ~ 42866909 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013785
ATGTCTAATTCAGAAACCCTTTGCAGGAACAAGCCAGAGCGCAGACTGTGTGGGAAAGGCTCTGATGTGAAAACACTGTGCAAACGAGACTTGCAGAAGAATGACATATACCTGGAAAACGGGCTGGCATTTTTcagcggggggcggggggggcagtGGAGTTTCATCACGGTGGCGGATGTTGATGAGTGTGCAGAAGCATTGGATAACTGTAACATCGATGCAATCTGCCAGAATACCCTGAAGTCATATAAATGCATCTGCAAGTCTGGCTACACGGGAGACGGCAAGCACTGCGAAGACATCGACGAATGCGAGACTGATTACAACGGCGGCTGTGTGCACGAGTGCATCAACATCCCGGGGAACTACAGATGCACCTGCTACGATGGCTTCCGGCTGGCGCACGACGGACACAACTGTCTGGtcctcAGCACCAGGCAGACGGTGTGTGTTGACAGGGCCCTGGGTGTTTGGCGAGCGCGGTGCCAACACCCCAGCAGGGCCCTGTGTGGACTTGCACTGCCGAGCATCTGGAAGGGCTCCCTCTCTGGGAGTTTCCCCGGCTCTGTCGTGCCGCGGAGCTCCGTGTTTGTGCAGCTTTGA

Function

symbol description
scube1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

NR:

description
PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 3

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013785 True 606 mRNA 0.56 5 42842575 42866909

Neighbor

gene id symbol gene type direction distance location
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding upstream 28432 42785427 ~ 42814143 (+)
AMCG00013782 anks1a coding upstream 104354 42733545 ~ 42738221 (+)
AMCG00013780 anks1a,LOC107746333 coding upstream 118632 42718693 ~ 42723943 (+)
AMCG00013776 uhrf1bp1,LOC102796170 coding upstream 153372 42665282 ~ 42689203 (+)
AMCG00013774 pacsin1b coding upstream 272996 42555808 ~ 42569579 (+)
AMCG00013786 scube3,LOC106566910 coding downstream 26357 42893266 ~ 42936143 (+)
AMCG00013787 NA coding downstream 70092 42937001 ~ 42946339 (+)
AMCG00013791 adipor1 coding downstream 198427 43065336 ~ 43069921 (+)
AMCG00013799 NA coding downstream 237225 43104134 ~ 43108636 (+)
AMCG00013803 NA coding downstream 412222 43279131 ~ 43282004 (+)
G46739 NA non-coding upstream 50356 42703656 ~ 42792219 (+)
G46734 NA non-coding upstream 146952 42693662 ~ 42695623 (+)
G46730 NA non-coding upstream 150029 42692206 ~ 42692546 (+)
G46701 NA non-coding upstream 342976 42495746 ~ 42499599 (+)
G46652 NA non-coding upstream 949401 41845308 ~ 41893174 (+)
G46798 NA non-coding downstream 110703 42977612 ~ 42980239 (+)
G46814 NA non-coding downstream 131830 42998739 ~ 42999135 (+)
G46861 NA non-coding downstream 219481 43086390 ~ 43086600 (+)
G46905 NA non-coding downstream 483944 43350853 ~ 43352415 (+)
G46940 NA non-coding downstream 565467 43432376 ~ 43452015 (+)
AMCG00013777 NA other upstream 180731 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 193821 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 396095 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2452634 40377732 ~ 40389941 (+)
G46345 NA other upstream 2468775 40350652 ~ 40373800 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 173075 43039984 ~ 43044436 (+)
G46862 NA other downstream 220380 43087289 ~ 43089643 (+)
G46945 NA other downstream 571583 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 2167863 45034772 ~ 45095669 (+)
G47206 NA other downstream 2459749 45326658 ~ 45360882 (+)

Expression


Co-expression Network