AMCG00013811


Basic Information

Item Value
gene id AMCG00013811
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43470457 ~ 43487228 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013811
aacaaatatacacaggGACTGTCCAGCTCAGTGTGGGCACTCTCCCATCCCCTCTCCCCCTGCGATGAGCTCGTGGGGAGGAGTGTtcagggagaagagagagacactcAGAGCCCACAGCCTCAGTGACTGACTGCACACAGTGATTAGCAGGGAGAGTGGCCCACAGTGGGAGTCTTTGGCAGTGGGGATACAGAGGAGCACAGTGCAGACGGAGGGAGTGCACACAGAGGGGAGAACAGCGatcCAGTGGCCAATCCGCTGCCTGAATGAGAGAGTGGGCGGAGCCAGATCTCAGCATGGCTGCCAACAGCTACATGGCAGTGTCTGATGGGTATAGTGTGTCAGAGCCGCTGCAGTATTACGACGTGCTGTCGGACCCTCTGAGCTATTCACTGCAGGAGACAGACCTTCACATCCCTTCCTACAGCCAGTACCCAGGCATGCAATTCTCTCCTGTCCTGCCGGGGGCGCCCTCTCCCCAGGCCTGTTACCCGCCCTACCCCTACAGCTCGCAGTGCCCAGAGGGACCGTATCCAGCAGGGGGCTGTGAGCTTGGGCGATCCCCCTGCATGGTGCCCTTGGAAATGGACGCCAGCCTGCCTGGCCTCCCTGGCCTTCCAGGGCTGCCCCTGCTGAAAAGGACACGGATGGGCCCTGGCAGCCTGCGTCTGCGTGGGATGGACGagctgtgtgtggtgtgtggagACAAGGCCTCGGGGTATCACTACAATGCTCTCACTTGTGAGGGTTGTAAAGGTTTCTTCCGGCGCAGTATCACAAAGCAAGCTGTGTACAAGTGCAAGAGCGGGGGCGGATGCGAGATGGACATGTACATGCGCAGAAAGTGTCAGGAGTGCCGTTTGAAGAAGTGCCGAGCGGTGGGCATGCTGGCAGAGTGTCTGCTGACTGAGGTACAGTGCCAGTCTAAGAGGCTGCGGAAGAGTGCCAAGCAGGGGGTGGAGTTGCGCTGCACCATCAAGCAGGAAGAGGATGAGGGCCCAGAAAGCCAGAGAGAGGTGTCCTCCACCAGCAGACTGTCCACCCAGGCTGGCACAGGGCTGACCCCCGAGGAGCAGCACTTGTTAGATGGAATTGTTAATGCTCATCGTCGGTACAAGACACAGCAGGAGACACTGCAAGGCAGAGCCTTTGAGATGCCAGCCCCAGAAGAGAGCTTTGACCGGCTGGCAGGTCTGGGTTCGCCACAGTACCAGAGCTTCCTCGAGTTCTCCCAAAGTCTCCCTGGCTTCAAGCTCCTGGACTGTGATGACCAGACCGCCCTGCTCAAGGGCTCTGCGGTGGAGGTTATGTTTCTTCACTCAGCCCAGCACTTTAACCAGGGCCCCCAGGGGGACACAGCAGATCCTCTAATCTGGCCACTGTCGGCTGTGTACCCCCCCACTGCAGACCACAGCCCCCTCTACTGGGTACGGCCCCTGGACTCTAATGAGGGGGCCAGAGCAGCACCCCCTGGGACACCAGTAGTGGCAGAAGGTCTGCTAGACCCCGTCATGAGCTTTTTCCGCAGTATGGCCATGATAGGGGTAATGGAGTCCGAATATGCTCTTCTCACTGCCACAGCGGTGCTTTGCTCAGATCGGCCCATGTTGCATGCCCGAGCCAAGGTTGAAAGCCTGCAGGAGCCAGTGCTGGAGCTGTTGGGCCGGGTGAGTGGGCTCTGCCACCCTGAGGACCCCCGGCATTTTGCCAGGCTGCTCGGGCGCCTGACAGAACTGCGCACACTCCAGCACAACCACCTCCGCCTCCTGTGTCAACACCCCTGGGCACCACAAGACTGGCACCTGCACTGAGACAGGAGAGACAGGACTGATGGGGGGGAGGGCAAGTGGCTGGGTAAGGGGAAGGGGAATGGACAGGCTGAGGGAGACTGAGGGAGTGAGGAAACAGGAATGTAAAAGGGTGGAAAGAGAGGACAGAGGCTGGGGAACGCAGAGAGGTTGTTAACACTCAGGGAGGAAAGTAAGAAGGCACCCATGACTAAATGGCAAGCTTACAATGGGCTGGGAATTGATTTAGAAGGACAATTGAATTCTGTGAAAGCTACAAGCAGTGGAGGGAGGAAACAGCCAGCATCCACAAGGACCTCATCTTCTCCTGGGGAGATCCACATCCCGATGAGCGTCACACAGATTGCTGAGACTCACTCATCTGCAGACAAAAACAGTGCAAGTGTGCTTGTGCGTAGCTTTAGGTCTCAATAATCAACAACATGAAGATTTGAGTAGTGACATCTCAACTGGACACCTTTTAACCTGTCATTTGACCACCAGAGGTGTAGTAGATATATTTGGTGTCAACAAAGACAACATGCAAGAACTCTTGTGCCTGCTGATGCGTCTCAATGGTCAACAACTCAAGATTCGTTAGTTATTTCATTCCTTTCTACATGTAATATAGCTTATGTTGGGACAACTCATAATTATGTACATAGATAACCTCCCCATTCCctattctatattttattaatgtgggCTTTCTGGTGGGGCTGTTGTAGCTTTGTCTAAAGTCTACACTTCCCACAAAACCATCAACAAAGAGAACAAGtgacttttatttgttttttgttatccAGGGAATTAGCCTGTGTCTGTAGGGGCTGTGTTGTGAGGCAGTTGTCTCTCACACATaaactaaaattgagcttttaaattgtgtattaagGGGAATGTAGAGAAAATAATTCCTTTCATATGTGAGAAAGCCACAAAGCCCATCATACTCCTTTCTGAGCCTATGGATGAAATCCCAATCACAGTGCAAACATCATTAAAGTTTCTCATGGCTGCAGGTACAAATACGCCTATTGTGCTTTCAATTCCTATTTAAGTAAAAGATTTCCAAATACCTATTTGAAGTCCTGTGTGTATACTGCAGACATTTAATTTACCagttctgttattatttatatgttttcgGGTACTTTCACTCTTTCTTTATCATGTTGATTTTCTTCATATTCTCTTAGCGGGAGTTCCGATTGAGTGTGTAAACAAATACGCATTATAAACACAATGTATATCTGTGAAATATCCCAGAAGAGGATTTTGTGAATCAGTGGAGACATCAGCTGCACACAATGGTCAAAGTGTTTCTCATGGACAACTTAGGATATTAATGTGTAAGTTATTTAAACTGAGATACTAGAATACCAGACTATGTGGCAGTTGGAGCAACCTTTTTACCCTTGTGCCAAAAACAATTAATCGGAATTTGAAAATTTCCTTCCATCTGGGCGTCAAGTAAAACCATTATGTCATTGTTGTTCAACAATTCTGCATTAGGTAttatatttggttttattatttgttattattactgtatgGGTTGGAAACAATGACTGATAAATGATCTTGCATAGCAAAATGGGGAAgtgcaaatattttttatgcagaaatatcagaaatgtatttgattccTATGATAACAGGATATGTTTTCCATAATCTGGGgttatttcttttcattattggaaatatgcaaaacaataagACCTTCTCCTGATGCATTAACAGCACAAAAATGGAACCataatcaaacacacacaaaataatgatcttgtcacttttgtttcctttatctTGAAAAACTAGTTTTTCACAATGTTGTCCCCAAATGTGCATTACTACTTCAAGAACACTGAAGACCATTGACATAATCAGTTTGTATGTAATTAATGCTCTTACTCTACAACATATAATAAAAGCATTGAATCTTGT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013811 True 3740 mRNA 0.48 11 43470457 43487228

Neighbor

gene id symbol gene type direction distance location
AMCG00013807 NA coding upstream 39119 43425955 ~ 43431338 (+)
AMCG00013803 NA coding upstream 188453 43279131 ~ 43282004 (+)
AMCG00013799 NA coding upstream 361821 43104134 ~ 43108636 (+)
AMCG00013791 adipor1 coding upstream 400536 43065336 ~ 43069921 (+)
AMCG00013787 NA coding upstream 524118 42937001 ~ 42946339 (+)
AMCG00013812 NA coding downstream 3558 43490786 ~ 43514457 (+)
AMCG00013815 NA coding downstream 107213 43594441 ~ 43607562 (+)
AMCG00013817 NA coding downstream 130823 43618051 ~ 43620709 (+)
AMCG00013821 NA coding downstream 143240 43630468 ~ 43631598 (+)
AMCG00013816 NA coding downstream 169999 43657227 ~ 43668484 (+)
G46949 NA non-coding upstream 6451 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 18442 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 27161 43441497 ~ 43443296 (+)
G46905 NA non-coding upstream 118042 43350853 ~ 43352415 (+)
G46861 NA non-coding upstream 383857 43086390 ~ 43086600 (+)
G47032 NA non-coding downstream 213696 43700924 ~ 43712011 (+)
G47040 NA non-coding downstream 432441 43919669 ~ 43919967 (+)
G47080 NA non-coding downstream 735180 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 801829 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 811041 44298269 ~ 44298664 (+)
G46945 NA other upstream 29759 43438492 ~ 43440698 (+)
G46862 NA other upstream 380814 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 426021 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 808613 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 821703 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1547544 45034772 ~ 45095669 (+)
G47206 NA other downstream 1839430 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2329144 45816372 ~ 45823228 (+)
G47398 NA other downstream 2447431 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 2456343 45943571 ~ 45959194 (+)

Expression


Co-expression Network