AMCG00013815


Basic Information

Item Value
gene id AMCG00013815
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43594441 ~ 43607562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013815
AGCAACCCCGCCGAAGACCGTAAACAGGGAGCCCAGACAGCAGACACATCAGAATCACAAGTCACATGCCACAGTCCAGGGACCCCTTCCCCTACCCGAGATTTGAAAATGATGACACTTTCCTCGGAGACAGCAAGAGATATCACATACCGCACGATTCAAAGCCCACCCATCTGGCGCAGAAGGACGACCCCTGGAATCGCCTGAACGCCGGAGCCAAGCAGTCCAGCAAAAAGCAAGAGGTCCTAAACAGGGACAAACCTACACCTCACCCCCCGACTGACAGAAAGACAAAGCAACTCTTAAAGCACATACATATCCGACTGTAGCTGTAATACACCAACCTATAGCTCCTGCACTAAGCCCGATGCACTTAACCATAAgatcctgggctgctcagcacacttattttgcacttcattaACCTGTTCCTTTATGCTCCTGCGCACTTGTGTATTTGCAGCACTTCTATTGTGTATGCCttcccctccctttagcacatatctAGGATTTAGCTGCTTATATCTGCACTTATTGGCTCATTTCACTAGTATGGTTACTGATTGTGTTACTTCacctttgtaatgctttatgCTTGTATAAACGTTTAATTGCCCTGAAatgttcaaaattaaataagttttaaaacagGGATTTTACACAAACATTCAAATGATGCCCACATTTAGGAGTGTTAATCCTGGAAGCTTATGCATTtacaaattgtaaacaaaatcaaacctaTTCCCCCTCCTTCTTAATGGACTTTATAGTCTGAGTTTGTTCACTGTACTTCTGACGTTTTTGTCAAGGCCCCTCAAGACAGCCTGGACTTTAGGATGAAGTCCACCTATAACCAACATGAAGACTTCCTGAAGAGCAAGAATGAGACCCTGTACCAAAGTGAAACCTTTAATGAGGACCATGGGAGGATTTTGACGAACCATGTGAAGGAAGACCCTCCACAGAACAACCCTGAGAAGATTCCATTCAGAATGTGTGTCAGCGGTGAGAGACTGTCCATTCACAGGATCAAGGGAACCATAGCAGGGGGCGGTGTGGGGTTACTCACAGCCCGCGTCCCGGCACCCTGGCAACCCGGCGAGGACCGTAAACAGCCCGGAGCCGCAGCAGCCTGCAGTCCCACAGCTGCGCTTCCCACGGGGTTCAACTGAACATCCTCGGCCATGCCTCGGTCCAGGGACCCCTTCCCCTCCCCGAGATATGAAAACGACGACACTTTCCTCGGAGACAGCAAGAGATGCCAGATATCGCGATATTCAAAGCCCACCCATCTGGCGCAGAACGACGACCCCTGGAGCCGCCTGAGCGCCGGAGCCACGCTGTCCAGCAGCAGGAGAGAGGTCCTGCACTTTGACCCCGAGGTACAGATACAGACCTACACCTCACCCCCGACTGACAGAAAGACAAAGCAACTCTGAACTGCTCCTGTTCCTGCTGGGTGTGAAGCACAGAAATATCAGACTGTCTGTGTAATACACCAGTGTAAAcccctgggctgctcagcacacTTGTATCGTTTGCACTTCTGTTACTGCAACTTCTCCTGTCTTCCCCTGCCTTCAGCATACCTAGGACACTGTATTGTGTGCACTTATTGGCTCATTTTACTAACTGTAACTGcacttggataaaggcatctggtcaggagaacaaaaagaaaaaaagtttaaaaacaaggaTTTTATACATCAATGCAATGGCTGCCCATGTTTACGGAGTTTGTCAATCCTGGAACTTTATGCATTTGCAAATTGTGAACTAACTCAATCCCTTGTTTCCCTCCTTAATGATGGACTTAATAGACAGTTTTGGTACATTTGCTATTTGTGTCAAGGCCCCTGAGGACAGCCTGGATTTTAATCTGAAGTCCACCTATAACCACCACCAGGAGTTCCTGAAGCCTAAGAATGAGACCCTGTACCAACGAGAAACCTTTACTGAGGACAATGGGAGGATTTTGAAGAACCGTGTGAAGGAAGACCCTCCACAGAACGACCTTCGGAAAAACCCCAACAGAGTGTGGGTCAGCGCTGAGAAAGCGTCCATTTACAGCATCGAGGGAACCATAGAGAGCCATCACAACGCATCAACTAACAGGGGCTACTCCAGGAAGCACGACGGAGGTTTCTACTCCACTTAAAAGCACAGAGGAGTCCCGGCAGTCCAAACGCCTCCTCACCCTGCTGGACCTTGGTCACAGACAGCACTGCGCTCACTCATCATGGTGCATGCCATGGGTGTTTGTTCCTCAACCTTTCTGCCGGATCCCGGACCCCGGGCCGGAGCCCCGAGTCTCCCCGGCTCTAGTATATCTGATCAATTCATCATGTCTGAACCACATGTCTGCGGCGGCCCTGCTGCGCGGAAGTGCCTCCTGCTCACCGCCGACTGCACGGCTCGCACTGCGGGTTTTATCACTTCAGAGTCGGAACCGGGCCGGCACTCCGACCTGATCAAATAAGATCACggtgtagatttttttttttcagtttgtttaaacactcacacaacacacatgcactctcGCACAAACACGCATCCATccacgcacacacgcactcacgCTTTCACTCTCCTTGCGCACCACGCCATGCACACGTCCTTTCGAATCTGGAACCTCCGACTGCGCAGGCGCCGTC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013815 True 2663 mRNA 0.50 8 43594441 43607562

Neighbor

gene id symbol gene type direction distance location
AMCG00013812 NA coding upstream 79984 43490786 ~ 43514457 (+)
AMCG00013811 NA coding upstream 107213 43470457 ~ 43487228 (+)
AMCG00013807 NA coding upstream 163103 43425955 ~ 43431338 (+)
AMCG00013803 NA coding upstream 312437 43279131 ~ 43282004 (+)
AMCG00013799 NA coding upstream 485805 43104134 ~ 43108636 (+)
AMCG00013817 NA coding downstream 10489 43618051 ~ 43620709 (+)
AMCG00013821 NA coding downstream 22906 43630468 ~ 43631598 (+)
AMCG00013816 NA coding downstream 49665 43657227 ~ 43668484 (+)
AMCG00013818 NA coding downstream 64671 43672233 ~ 43675241 (+)
AMCG00013824 NA coding downstream 79790 43687352 ~ 43696325 (+)
G46949 NA non-coding upstream 130435 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 142426 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 151145 43441497 ~ 43443296 (+)
G46905 NA non-coding upstream 242026 43350853 ~ 43352415 (+)
G46861 NA non-coding upstream 507841 43086390 ~ 43086600 (+)
G47032 NA non-coding downstream 93362 43700924 ~ 43712011 (+)
G47040 NA non-coding downstream 312107 43919669 ~ 43919967 (+)
G47080 NA non-coding downstream 614846 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 681495 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 690707 44298269 ~ 44298664 (+)
G46945 NA other upstream 153743 43438492 ~ 43440698 (+)
G46862 NA other upstream 504798 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 550005 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 932597 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 945687 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1427210 45034772 ~ 45095669 (+)
G47206 NA other downstream 1719096 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2208810 45816372 ~ 45823228 (+)
G47398 NA other downstream 2327097 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 2336009 45943571 ~ 45959194 (+)

Expression


Co-expression Network