Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00013817 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 43618051 ~ 43620709 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0097458 | obsolete neuron part | cellular_component |
| GO:0001917 | photoreceptor inner segment | cellular_component |
| id | description |
|---|---|
| ko04744 | Phototransduction |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00013817 | True | 273 | mRNA | 0.55 | 3 | 43618051 | 43620709 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00013815 | NA | coding | upstream | 10489 | 43594441 ~ 43607562 (+) |
| AMCG00013812 | NA | coding | upstream | 103594 | 43490786 ~ 43514457 (+) |
| AMCG00013811 | NA | coding | upstream | 130823 | 43470457 ~ 43487228 (+) |
| AMCG00013807 | NA | coding | upstream | 186713 | 43425955 ~ 43431338 (+) |
| AMCG00013803 | NA | coding | upstream | 336047 | 43279131 ~ 43282004 (+) |
| AMCG00013821 | NA | coding | downstream | 9759 | 43630468 ~ 43631598 (+) |
| AMCG00013816 | NA | coding | downstream | 36518 | 43657227 ~ 43668484 (+) |
| AMCG00013818 | NA | coding | downstream | 51524 | 43672233 ~ 43675241 (+) |
| AMCG00013824 | NA | coding | downstream | 66643 | 43687352 ~ 43696325 (+) |
| AMCG00013826 | NA | coding | downstream | 483462 | 44104171 ~ 44123031 (+) |
| G46949 | NA | non-coding | upstream | 154045 | 43462771 ~ 43464006 (+) |
| G46940 | NA | non-coding | upstream | 166036 | 43432376 ~ 43452015 (+) |
| G46941 | NA | non-coding | upstream | 174755 | 43441497 ~ 43443296 (+) |
| G46905 | NA | non-coding | upstream | 265636 | 43350853 ~ 43352415 (+) |
| G46861 | NA | non-coding | upstream | 531451 | 43086390 ~ 43086600 (+) |
| G47032 | NA | non-coding | downstream | 80215 | 43700924 ~ 43712011 (+) |
| G47040 | NA | non-coding | downstream | 298960 | 43919669 ~ 43919967 (+) |
| G47080 | NA | non-coding | downstream | 601699 | 44222408 ~ 44223401 (+) |
| G47106 | NA | non-coding | downstream | 668348 | 44289057 ~ 44291796 (+) |
| G47107 | NA | non-coding | downstream | 677560 | 44298269 ~ 44298664 (+) |
| G46945 | NA | other | upstream | 177353 | 43438492 ~ 43440698 (+) |
| G46862 | NA | other | upstream | 528408 | 43087289 ~ 43089643 (+) |
| G46840 | LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 | other | upstream | 573615 | 43039984 ~ 43044436 (+) |
| AMCG00013777 | NA | other | upstream | 956207 | 42650190 ~ 42661844 (+) |
| G46723 | cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 | other | upstream | 969297 | 42644987 ~ 42648754 (+) |
| AMCG00013838 | si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 | other | downstream | 1414063 | 45034772 ~ 45095669 (+) |
| G47206 | NA | other | downstream | 1705949 | 45326658 ~ 45360882 (+) |
| AMCG00013872 | NA | other | downstream | 2195663 | 45816372 ~ 45823228 (+) |
| G47398 | NA | other | downstream | 2313950 | 45934659 ~ 45941906 (+) |
| AMCG00013879 | dennd2d | other | downstream | 2322862 | 45943571 ~ 45959194 (+) |
