AMCG00013820 (tmem167b)


Basic Information

Item Value
gene id AMCG00013820
gene name tmem167b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43609282 ~ 43614579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013820
ATGCTACTGCCTTGGTGTACCTGCGCCTCGGTTGTGCGGGGCTCCATTGGTCGCGTCTGGCGGAGCGGGTCGCTCGGCGCTCGTCTGCCTGCGCCTGTCTGTTTACTGCCACAGCAGCGGGCGGAAAATGAAGCGATAAGGCAAGAAGTGGGCATCGTGAAGACGGGGATCTCGCTGCCAGAGGATCATACACGGACGGCCAACATGACGAACGTTTACTCATTCGATGGCATTTTGGTGTTTGGCTTACTGTTTGTCTGCACGTGTGCATACTTGAAGAAAGTGCCCCGGCTAAAGAACTGGCTCCTGTCTGAGAAGAAAGGAATCTGGGGTGTCTTTTACAAAGCGGCAGTGATCGGCACACGGCTTCACCTCGCGGTGGCTGTCTCCTGCGTGGCCATGGCCTTCTACGTCTTGTTTATAAAGTGACATTAAATCGGGCTTCGCTCACGGACACACAATGAACAATGCGCTCGACGCCCCCGGACCGGTGTACAGAACGGGAACCGACTTCTGTTTATAGGAAGGTGCCAGACAAAGCCCTTTCATCCTTCTGGAGACCCTTCCGGAACCCACCGGCTCACCCCTGCTTTTACtgaatggagagaaaaaaaacccTGTTGGTTTTGAGTTGAATTGAGTTTTGTATTCcttggttttattgttttgctgaaTATGAACACGCAGAAAAGGCTTGTGTTGTATATCTGGGGTATGGGGGAAGAAAAGGGTAACACTCGCAGTGCCAGGCATAGTGAAAACTATAAAACGAATCTGGATTTGTTTCTATTTCCTTGTGTGGGTTTAAAATTAGACATGGGGTTCTTGTGttgcacacagcagcagtggggTATACATGTAGAATCAGATTTTTAACTAAATTATTGTTGGGGCTCTTGTATTCGAAATGTGTGTCAAACAGATCTCAATTAAACAGGGCAGGGGAGTAGGTATGACGTGTTCAAACAGTTAGACACAGAAGTGCTGTACATGGTCCTGGGTTTCCCAATTCCCATGAAATCGCGTTAACGGGGAAATCTGGTAATCCTGCCTAAAAGTGTTTTTGACTTTCAGTTTTCAAGAGGCTCATGAACAACTGTTCTCCGTGTTGTAACTGATGGATTCCAGAGAGATTTCTTCCTGCTCTAATGAGTGTCTGCAGTTCAGGGCACAATTAGCAGCAGGCAGAGCTCACATCCCTGACACTTACAGCTGTCACGTTAAAAAGCAGCAGGCGGTGGGATTGTGGGAAATAATTCTCTGCATCTCAACATGTTACCACAGCTGCTTGAGCAAGATGCATCCATTCCTTCAAAAACTATCCTCCTGACAGTCATGTTTGTCTCATTGTCACAATCACTTCCCATGCCCTGTTTTCAGGAtgataaaaatgacaaaacacaatCCCACTATTTGCCTCCCTCCTTTTTTTAAGCATTGGGGAAATTATAgccaggttttcttttttgcttctactgtacttttttttctggtttaaattattatataatttcagtttAGGCCCGTATGATGTCTTTTGCATTCATGATCATAATGACAGGTTTCCTCAGAGGCAGATATCAAGTTTCTAAACTTCCTTGGTTCTGTATGTACTAGTTGTTGGCAGAGGGGATTTCTGAGGTGAAGTGAAATGCAGGATCTGATGCACAAACTCATAGATTAAGACTTAGGTAAATGTTgcacagagaaacagaaggaAACACTACTTGCAAGCAATGTTTCACCTACACCTACTCccatttatatatctatatatagtagttttttttttctcttctgttcaaTTTAGAAGTTAAGATCTGAAGGAAAGGGTGAAATGAATGATGATACTGCATTACTCTCGTGTCCGCATTGTCAATACACTACAATAAGTTTAAAGAATCAagttgcaaaatgttttaatgctgcCATGAACTCAAAGCCACGGCCATAAAATCAAATTGATACCAAGTGTGTCCTACATTTAGCAATGAGGTCATGGATAATGGGAAATCGGTGGGCATAAATTGCGTTACATGTATATAGACCATTGTTTACTTCAGTGCATCAGTAAGGTGAGTGTATGGGCAATATTTAACGAGTGCCTCAATTTTTGTATCGTTTTGCATATGCAGTAGTGTTCCAGATTTAATCAATTGTAGAAAACACTGTATTGTGTCCTGTTATCCAAGTTCcccattgtcattttcaaatgcGTTTAAGTGAGCGGTCCACCTACATTGAAATTAGGTTTTGCTAGTTATTTGGCTAGGAGAGTTCTGGAGCATGTTGGAGTGGGAGCGTGTATTTTCATTGGTTACAGACAGGGCATTGTCTGTGCTCTTGACTTGCATCAGAGGCTTCTTAAAGTAAAGATAATTCTGTCAGGTGCTCCCTGGGTAACTCCGGCAAAGTGAAAATCAGAACATATACTGGAATGTATCAGATATATCACTAATTAAGAGCCTGGAAGATTGAATCCCACATGTGACCTCGTTGGTACTGGAAGTTAAACTTTTGACTCTGAAATGCACAAAAGGaccctgttttttttgtttaggaCCATCTCCAAAAAAACAAGGTTCATTTATGTTCTAGTGAGAAAGCGATGCTAAGCTCTTGCAATGTGCAGGttcctttttacatttaaaaaacaaatcagtttaatgctgtaggaaaacaacaataaaatgagcTGTACAACATGTCATTAGTCTGGAAATACCAGATGGTTTCTTTGAATGGGTATTTGTAATGTCCCTGTGCACAAATTCACACTATGCTTAAATGTTGTTTGTCTGATCAGCTGGTTTCCTAGGCTGTGAGTCTCGGCTGACATCATGGGAATCTGTTTCTACCTTCGGGGGAGGGGTGGGTTCCTTCTTCTTTATTAAACGTACGAGAGAGATCCTAGTTAACAACACTGGTCTGGACTCGTATTATTTTCACTCAAAAGTCTCCATTTTCCTCCCTGGGTTCACTG
>TU58613
CTGGCGGAGCGGGTCGCTCGGCGCTCGTCTGCCTGCGCCTGTCTGTTTACTGCCACAGCAGCGGGCGGAAAATGAAGCGATAAGGCAAGAAGTGGGCATCGTGAAGACGGGGATCTCGCTGCCAGAGGATCATACACGGACGGCCAACATGACGAACGTTTACTCATTCGATGGCATTTTGGTGTTTGGCTTACTGTTTGTCTGCACGTGTGCATACTTGAAGAAAGTGCCCCGGCTAAAGAACTGGCTCCTGTCTGAGAAGAAAGGAATCTGGGGTGTCTTTTACAAAGCGGCAGTGATCGGCACACGGCTTCACCTCGCGGTGGCTGTCTCCTGCGTGGCCATGGCCTTCTACGTCTTGTTTATAAAGTGACATTAAATCGGGCTTCGCTCACGGACACACAATGAACAATGCGCTCGACGCCCCCGGACCGGTGTACAGAACGGGAACCGACTTCTGTTTATAGGAAGGTGCCAGACAAAGCCCTTTCATCCTTCTGGAGACCCTTCCGGAACCCACCGGCTCACCCCTGCTTTTACtgaatggagagaaaaaaaacccTGTTGGTTTTGAGTTGAATTGAGTTTTGTATTCcttggttttattgttttgctgaaTATGAACACGCAGAAAAGGCTTGTGTTGTATATCTGGGGTATGGGGGAAGAAAAGGGTAACACTCGCAGTGCCAGGCATAGTGAAAACTATAAAACGAATCTGGATTTGTTTCTATTTCCTTGTGTGGGTTTAAAATTAGACATGGGGTTCTTGTGttgcacacagcagcagtggggTATACATGTAGAATCAGATTTTTAACTAAATTATTGTTGGGGCTCTTGTATTCGAAATGTGTGTCAAACAGATCTCAATTAAACAGGGCAGGGGAGTAGGTATGACGTGTTCAAACAGTTAGACACAGAAGTGCTGTACATGGTCCTGGGTTTCCCAATTCCCATGAAATCGCGTTAACGGGGAAATCTGGTAATCCTGCCTAAAAGTGTTTTTGACTTTCAGTTTTCAAGAGGCTCATGAACAACTGTTCTCCGTGTTGTAACTGATGGATTCCAGAGAGATTTCTTCCTGCTCTAATGAGTGTCTGCAGTTCAGGGCACAATTAGCAGCAGGCAGAGCTCACATCCCTGACACTTACAGCTGTCACGTTAAAAAGCAGCAGGCGGTGGGATTGTGGGAAATAATTCTCTGCATCTCAACATGTTACCACAGCTGCTTGAGCAAGATGCATCCATTCCTTCAAAAACTATCCTCCTGACAGTCATGTTTGTCTCATTGTCACAATCACTTCCCATGCCCTGTTTTCAGGAtgataaaaatgacaaaacacaatCCCACTATTTGCCTCCCTCCTTTTTTTAAGCATTGGGGAAATTATAgccaggttttcttttttgcttctactgtacttttttttctggtttaaattattatataatttcagtttAGGCCCGTATGATGTCTTTTGCATTCATGATCATAATGACAGGTTTCCTCAGAGGCAGATATCAAGTTTCTAAACTTCCTTGGTTCTGTATGTACTAGTTGTTGGCAGAGGGGATTTCTGAGGTGAAGTGAAATGCAGGATCTGATGCACAAACTCATAGATTAAGACTTAGGTAAATGTTgcacagagaaacagaaggaAACACTACTTGCAAGCAATGTTTCACCTACACCTACTCccatttatatatctatatatagtagttttttttttctcttctgttcaaTTTAGAAGTTAAGATCTGAAGGAAAGGGTGAAATGAATGATGATACTGCATTACTCTCGTGTCCGCATTGTCAATACACTACAATAAGTTTAAAGAATCAagttgcaaaatgttttaatgctgcCATGAACTCAAAGCCACGGCCATAAAATCAAATTGATACCAAGTGTGTCCTACATTTAGCAATGAGGTCATGGATAATGGGAAATCGGTGGGCATAAATTGCGTTACATGTATATAGACCATTGTTTACTTCAGTGCATCAGTAAGGTGAGTGTATGGGCAATATTTAACGAGTGCCTCAATTTTTGTATCGTTTTGCATATGCAGTAGTGTTCCAGATTTAATCAATTGTAGAAAACACTGTATTGTGTCCTGTTATCCAAGTTCcccattgtcattttcaaatgcGTTTAAGTGAGCGGTCCACCTACATTGAAATTAGGTTTTGCTAGTTATTTGGCTAGGAGAGTTCTGGAGCATGTTGGAGTGGGAGCGTGTATTTTCATTGGTTACAGACAGGGCATTGTCTGTGCTCTTGACTTGCATCAGAGGCTTCTTAAAGTAAAGATAATTCTGTCAGGTGCTCCCTGGGTAACTCCGGCAAAGTGAAAATCAGAACATATACTGGAATGTATCAGATATATCACTAATTAAGAGCCTGGAAGATTGAATCCCACATGTGACCTCGTTGGTACTGGAAGTTAAACTTTTGACTCTGAAATGCACAAAAGGaccctgttttttttgtttaggaCCATCTCCAAAAAAACAAGGTTCATTTATGTTCTAGTGAGAAAGCGATGCTAAGCTCTTGCAATGTGCAGGttcctttttacatttaaaaaacaaatcagtttaatgctgtaggaaaacaacaataaaatgagcTGTACAACATGTCATTAGTCTGGAAATACCAGATGGTTTCTTTGAATGGGTATTTGTAATGTCCCTGTGCACAAATTCACACTATGCTTAAATGTTGTTTGTCTGATCAGCTGGTTTCCTAGGCTGTGAGTCTCGGCTGACATCATGGGAATCTGTTTCTACCTTCGGGGGAGGGGTGGGTTCCTTCTTCTTTATTAAACGTACGAGA

Function

symbol description
tmem167b Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167B (transmembrane protein 167B).

NR:

description
PREDICTED: protein kish-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013820 True 2983 mRNA 0.43 4 43609282 43614579
TU58613 False 2848 lncRNA 0.42 3 43609361 43613251

Neighbor

gene id symbol gene type direction distance location
AMCG00013819 NA coding downstream 15816 43569566 ~ 43593466 (-)
AMCG00013813 NA coding downstream 60036 43538890 ~ 43549246 (-)
AMCG00013814 sike1 coding downstream 145218 43458376 ~ 43464064 (-)
AMCG00013809 csde1,LOC107731193,LOC106566849,LOC107549382 coding downstream 154237 43432634 ~ 43455045 (-)
AMCG00013808 nras,LOC107682628 coding downstream 186100 43409249 ~ 43423182 (-)
AMCG00013823 NA coding upstream 80328 43694907 ~ 43700141 (-)
AMCG00013822 slc16a1b,slc16a1a,LOC107591766,LOC107711946,LOC107669643,LOC107717534,LOC107679710 coding upstream 89419 43703998 ~ 43710995 (-)
AMCG00013825 LOC106517667,LOC108231490,LOC103356074,LOC106582736,LOC107098533,LOC105928018 coding upstream 390298 44004877 ~ 44006633 (-)
AMCG00013828 NA coding upstream 546073 44160652 ~ 44177626 (-)
AMCG00013831 LOC106566046,LOC106582739,LOC105908306 coding upstream 571433 44186012 ~ 44202447 (-)
G46990 NA non-coding downstream 42287 43566795 ~ 43566995 (-)
G46982 NA non-coding downstream 86400 43522328 ~ 43522882 (-)
G46855 NA non-coding downstream 539109 43069972 ~ 43070173 (-)
G46849 NA non-coding downstream 539546 43035563 ~ 43069736 (-)
G46817 NA non-coding downstream 607579 43001481 ~ 43001703 (-)
G47041 NA non-coding upstream 305082 43919661 ~ 43919962 (-)
G47055 NA non-coding upstream 501661 44116240 ~ 44123206 (-)
G47082 LOC100696538,LOC103362809,LOC102199655,LOC108254710,LOC103467398,LOC102777028,LOC108265463 non-coding upstream 511187 44125766 ~ 44148931 (-)
G47096 NA non-coding upstream 607807 44222386 ~ 44223384 (-)
G47109 NA non-coding upstream 674476 44289055 ~ 44291787 (-)
G46742 NA other downstream 908214 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 1153524 42428777 ~ 42455758 (-)
AMCG00013732 NA other downstream 2972054 40618343 ~ 40637228 (-)
G46423 NA other downstream 3000754 40603601 ~ 40608528 (-)
G46418 NA other downstream 3021890 40586816 ~ 40587392 (-)
AMCG00013846 NA other upstream 1724280 45338859 ~ 45344015 (-)
G47261 NA other upstream 2008659 45623238 ~ 45623895 (-)
AMCG00013882 cry4,LOC108413014 other upstream 2305057 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 2347611 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 2460850 46075429 ~ 46083542 (-)

Expression


Co-expression Network