AMCG00013824


Basic Information

Item Value
gene id AMCG00013824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43687352 ~ 43696325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013824
ATGTGGTCTTCTGAGGCCATGGACGGGACTCGCCTGTCTGGGTATGGAGGCGTCCCTAACCTGGGACTCACCCTGGACGAGGAATGTCCTATAGAGGCAGGGATGGAGGATATTGGTGATGCCGTTGATCACACAGAGGGTTGTGCAGAGGCCAAGCGCCAGAGAAGCAGGGGATCAGCTCTCTCCTTCACTGGGCTGGGGGTGGACATCTGCAAGAGGCAGATTTTGACAGATGTCTCAGGGACTGTTCTACCGGGAGAACTTATGGCGATTATGGGACCAAATGGCTCTGGAAAGACCACTCTCATAAGGGCTCTCAGTGGCCGACTGCAAGCCAAGTCTGGACAGATCTCACTGGACGGACAAGTCGTGTCTCAAACCCACATGAGAAGAGTTTTATACGTGATGCAGCAGGATGAGTTTTTCCCATCGCTGACTGCACAGCTTCGGCTGCTGGATTCCATCAATGCGGTGCAGAGGAGAGAAATGATTGTCGAATTGGCAACAGACTTGCGTATCCAGCACTGTCTCCACACTAGTGACGGCCTGTCGcatggagagagaaagcgaCTGCACCTCGCCTGTGGACTCCTGTCTGACCCTGCTGTGCTGCTCCTGGACGAACCGACTACCGGGTTGGACTCGGGTGCAGCTCACGGGCTCTTCTCCACTCTGCAGCACTACGCCAAGGAATACGAGAAAACCATCCTGTGCTCGATCCATAACCCCTCCCCACAGATCCTCAGCACTGTCGACAAACTGCTCCTTTTATCACGTGGAGAGGTGAGCCACCGCTGGCGCCGTCTCACCAGCATCCCACCGAGGTCTGCACTGTCGAACGCCAGTGGCCGCGTTGTCTACTGTGGAGAGGTCTGCAGACTTTCAAGCTTTCTGGAAGATCTGGGAATGCCCTGTTCCTCACACTACAGCCCAGCAGACTACCTGTTGGACAAGCTGGAGGAGTTGCCTCAAGTCAGGCAGATCACGGTGACCTACAGTAAGAAGCTGCGTGCCAGCACTGAGAAGCAGTCTGGAAATGCAGGTCCACAGAGCCACACAGGCCACGCTGAGCAGGAGCAGAGTGGGATGGACGGGCCCTCTGCTTTCCGGATCCGGTTCTGTGCGCTGGCGCTGCGAAACTACAAGCTGAAGAAGGGCCTGTTTCCGCTCAGCGTGGTCAACACCTCCATTCTTGCAGTCCTGATAGGGGCCATATGGTTCCAGATCCCGAAGGAGGAAGAGCACATTAAGACGCATGTTTCAGCGGTCTTTGTCCTAATTCTGTACTGGTTCCTTGCCCCAGTCTCCTCTGCAGCAGTGAGTATCATCAGAGAATACCCCGTCGTCAAGCAGGAGCTGCTGGCCGACTTATACCCCCTGCCTGCCTACTTCCTGGCCAAGGAGCTGACGGAGCTGGGCCTCCTCTTGCCCTTCGTGGTCTGCCACTTCTCCGTCGCCTTCTGCATGGCTGGACTCTACGTGCCGCTCGTGTACATCACCCGCATGGCCGTCGTGGTCATGTGTGCCTTCGCCGCTCAGAACCGACATGAACCCGGTCAAGGCCTCCTCGTCCCGTGGGTCCTGTTTCACGGTGGCCAGCAGGCCGCTCGAGTCCGGGTCCGCCGCGTGGAGCAGCTCGGCCAGGACCAGAGTGCCAGAGCTGCGGCTGTACAGGTAGGCCTTCCAGGGGTCGGCGCCGGGCCGAGTGAAAGCCAGGGCCTGGATTTTGACGAGCTGCAGGGCCGCCTGCAGGACCTCTGGAGAGGGGCTGGGTCCCGGCCAGTCCAGGGTCTCCGCACAGGACAGCTCCAGGTTCAGCCAGTGCTTCTCAAAGAGCTCTGGGGACAAGGCTGGCCCCGCGGCGAGGCTGAAGTCTCCTCCCCCGCCGTCAGGGCACGCTGCCGGCTCATTGCAGGTCCCCACCACTGCCAAGAGGAAGAGTTCGACCTCAGATCCCTCTTTGTCCTGGCGCCCAGCAAGACTTGCcctctcttccctgtctgtatTACTCAGCCTCCACGTTCACCCACCTGCTTGCGGGGCCTCCTCGGGGCCCCGGGGGATGTGCTTGGGACTGCCCCTAGTGGCGAGGATGGCAGCCCAGCGCTCCCGGCCATAGATGGGCACCAGGGTGTTGAAGTCCGGGGCCCAGCTGTTGACCGGCTCCTCGGGCCTGCCGGTGATTACCCCCAGGGAGGGGTCAGATGTCGGGGCCCCCAGGACCCGCCTGGTCTCCTCCACCCCACAGTGCAGCAGGCGGTAGCACAGCAGAGCGCGGTCTCGCACGGCCATGCTACCTATGCAGTAGTGCAGCAGCCGCCCCAGCATGTCCTGCGTCTCGGCGGGGCGGGACAGGAAGAGGCGCAGCGTGGCCGTGAGCAGCTCCAGCTTGACAGCGGACGACAGCTCGGTTTTCAGGCTGTCGATGTAGTCCTCCAACACGTAGGGGGCGCTGGAGATGTGCTCCCCATGGACGCCCAGCAGCCAGATCAGAGCCTGCTTCCCCTGCAGAGGAGACTTCATCATTAG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013824 True 2529 mRNA 0.60 15 43687352 43696325

Neighbor

gene id symbol gene type direction distance location
AMCG00013818 NA coding upstream 12111 43672233 ~ 43675241 (+)
AMCG00013816 NA coding upstream 18868 43657227 ~ 43668484 (+)
AMCG00013821 NA coding upstream 55754 43630468 ~ 43631598 (+)
AMCG00013817 NA coding upstream 66643 43618051 ~ 43620709 (+)
AMCG00013815 NA coding upstream 79790 43594441 ~ 43607562 (+)
AMCG00013826 NA coding downstream 407846 44104171 ~ 44123031 (+)
AMCG00013827 rhoc,rhocb,LOC106582735,LOC105908082,LOC107668165,LOC108271788,LOC108427591,LOC107679717,LOC107569805 coding downstream 449146 44145471 ~ 44150277 (+)
AMCG00013829 NA coding downstream 507089 44203414 ~ 44221190 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding downstream 833393 44529718 ~ 44530827 (+)
AMCG00013834 NA coding downstream 939154 44635479 ~ 44661638 (+)
G46949 NA non-coding upstream 223346 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 235337 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 244056 43441497 ~ 43443296 (+)
G46905 NA non-coding upstream 334937 43350853 ~ 43352415 (+)
G46861 NA non-coding upstream 600752 43086390 ~ 43086600 (+)
G47032 NA non-coding downstream 4599 43700924 ~ 43712011 (+)
G47040 NA non-coding downstream 223344 43919669 ~ 43919967 (+)
G47080 NA non-coding downstream 526083 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 592732 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 601944 44298269 ~ 44298664 (+)
G46945 NA other upstream 246654 43438492 ~ 43440698 (+)
G46862 NA other upstream 597709 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 642916 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 1025508 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 1038598 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1338447 45034772 ~ 45095669 (+)
G47206 NA other downstream 1630333 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2120047 45816372 ~ 45823228 (+)
G47398 NA other downstream 2238334 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 2247246 45943571 ~ 45959194 (+)

Expression


Co-expression Network