AMCG00013826


Basic Information

Item Value
gene id AMCG00013826
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 44104171 ~ 44123031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013826
CTCACGCTGATCCGCAATAACCGTCCGACTGCGGGACCTGCGCCTCGGATACAATGAAGCGGTCGCTGCACTTTGAAACGCCTGCCTTGCAAAAGTCTTGAGTGACACGCACCGGACTTGCAGAGgaattaaagagagagagagagagagagagagagagagagagagagagagagagagaggaaaggaaagcCCGGCCTGTCACACGTCACAGGGGGTCAGGAGCGCCGCGGCTTCCTGCATCGCTCTCCCCGGGTAATGAATCATTGATGTCCGGCTCCATGTAGCCTGTCTGCCCCAGTGGCGTCCGCTCGGTCCGTGCCACAGCATGATCAGCCGGGTGAAGAGCGCCGTGTCCAGCCTGGTGGGGGGCATGATGCCGCAcggccaccaccaccacccccccggGCCCACGGGCCCCCAGAGCCCGGACGTGCTGCCCTCTCGCTTCGCCTACTCCCGACCCGACTTTCTGGACCTGACGGCCGAACTGCAGCAGCGCGCCGGCGACCACGCCAGCCGACCCGTCCTCACGCCGAGCCGGGAGCGCCGGCTGCCCTGGGGCTCGGGCTACGCGGAAGTCATCAACGCTGGGAAGAGCATGCTGAACGAGGACCAGGCCTGCTGTGAGGTGCTTTTCCTGAGGAAGAGCGGGGGCAAGCAGTGCGGCTCCACGTCAAAGGAGGAGGAGACGCAGCCGGGGGACAGCACGGGCATCCCCCTCCACTTCTGGGCTCTGTACGATGGCCACGCGGGGGCCGGCGCCGCCGTAATGGCGTCCAAGCTGCTCCACCGCCTGATCAGAGACCGCCTGAAGGAGATCCTGCACCTCCTGGAGGACCCCGCCACGCCGCCGCCCATCTGCCTGGGGAAGAACGGCAGCCCGCCCCGCGCAGAGCTGAAGAGGGCGCCATCGCAGGAGGAGGACGCGGAGACGCCCAGTGACATGACCCTGCGCTTCCACCTGGAGAAGGCGGTCAGTCTGGAGGGGCTGGTCGTGGGGACCATCGAGACCGCCTTCAAGCTGATGGATGACCAGATTGAAAGGGAAAAGGCATCGTTCAACATTTCCGGGGGCTGCTGTGCGCTGGCCATCATCCACCTAATGGGAAAGCTAGCCATTATCATCCGCAATGATGAAGTCATCCCCATGTCCAATGAATTCACCCCCGAGACCGAGAGACAGCGACTGCAGTATCTCGGTGTCCTGAAACCGGAGCTCCTGGGGAATGAGTTCACGCCCGTGGAGTTTCCCCGACGGATTCAGCACAAGGAGCTGGGGAAGAAGATGCTCTTCAGGGATCACACCATGACCGGCTGGGCTTACAAGACCATCCAGGAGGAAGACCTGAAGTTCCCCTTGATATACGGAGAAGgcaaaaaaGCGCGGGTGATGGCAACGATAGGGGTGACTCGGGGACTGGGAGACCACGACCTGAAGGTTTACAGCTCCAACATCCACATCAAGCCCTTCCTGTCCTGCTGCCCCGAGGTCAAGGTGTACGACCTCTCGGAGAGCGAGCACGGGCCGGACGAcgtcctggtcctggggactgACGGACTGTGGGACGTCACCACTGACCTGGAAGTAGCGGACGCAGTCACGGGCTTCCTGTCGCACAGAGAGCCCAGCGATCCCATGAGGTACACGCTGGCGGCGCAGGACCTGGTGCTGAGGTCGCGGGGGGTGCTGAAAGAGCGTGGCTGGCGGCTGCCCAACGACAAGCTGGGCTCCGGAGACGACATCTCGGTGTTCGTGATCCCCCTGGCCGGCCACGCCTCCGCCACATGACAGCACAGACCCGCGGCGGCGGCTTCGGCGAAAGCATCCGTTTAGGAACCGAGGGTCGCCAGTGACGGGTGACCCCAGCCATTCTCTTAGAGACGTCTCAGGTGGCCAATCCTCTCTTGCCTTTTCGGGTTAGAACCAAATTACAGCTCCTCATTGCGTTAGAAGACAAAATTAAGcgtaaattaaaatatttgtcgTTAATGTGACCGAGCTCATTCCtggttctttattttctgtccaaTTATATTTTAGTGTCCCTGTTGTGCGTGATTCCCCATTTTTTTGAATGCTGGGTTTTTGTCCCTTTACCTTCTCCAGCAAAAGTAGCCGCTAATCGCCTCTCTCCATTTCCCCAGTAGTagaaacaaattagtttcaCTCGCTGCCCTGGCACTCGCTGGCGATGCATCACACAACGAAGCCGGTTGTCCCCTTTCTGTCTGATACCAGAGCGACAGATTCAGGAGGGTCGGGGCATCACGGATCTGTTTTATGTCTCCTGGAGAGTAAATAACCGCCTGGCACACATTAAGCTACGCGGCTAAGATTTAACACtcatataaaatgttaatcACACTGCTCAAAGTGCACAGGAAAGGTGTGCACCCATGACTCCAGCTTTATGGCAGACCCAATCTGTCTGTCAAAGAGATGAGAGAAAACGTATCTTCCCCCCAAAGTGGCGCACAGTTTCCcagcattttttccatttcaacacTGAGCTGTGTTATAGTAATACGTGCGTAACGCTAAAATACTTCCCCGTCGCGTTTCCTCACCAGTAGTAATTGTGTGCTGGAATCGTGGATAGGGTTTCCGTGAAGTGGAAATTGCAACAGATGAACTCAGACAGGTACGCAACAGGAGACAAAATGGCGGGGAATCTCAGATTATAATAGAGACTTCATTCAGGTTCCCACTCGGGGCTTTTGACGTGCAATAGCTGTGACGCGGCTCTCGCTTTTAAACAGGTACGAAAATCAAACACTGTGCGGATGACCCTTCAACTTCATCCTCTGTTCTCTCCAGTAGTGCTAGTACAGAAGTTTCccattagggttagggtttacTATAGTTCTTAAGTAGCATAATCACAGGGATCTAAGCCAAgaaatttaacagtatttaACAGTGTTTACTAGTCGATCAGACGTATTGATTAAGCAGTGCTGGTCGACATGCAGTTAGGGTGGTCTGTTTAACCCGTCCATCCGTGTCTCTAGTCCTAGTTCGGTTTTccgatttgttttcctgtcctGTGCTCAAGGGACACTTCACACCAGTAGAAAGAGGTAGGCTCTCTTTATTCTACCTAAAGGACGCGTTGTGCTCGTGTGTCATCCTCACAGCGGGCAATGACAGCGCAGAACACGCCGCTCCAGAAAGAGATCGAAATATCCCACAATGCCGTGCATGATAGATTTAGCTGCCTTCGTATGCTTGGCTTGGAGGGGGAAAGAGGGCACGGACCATCTCAGATCTCTGGATTAAGCCTTTTACTACGAGGGTTGGATCTGCAAACGTAGGTCTGGACCAGGGGTGTGCAAAGCTGGAGAGCCACAGTCTTGTTAGTTCTTTAAATAAACGAGTgcttataaaacaaatctacttACATAACGCCAAGCTTCGCTAGGATGGAAACGCGGCGACTGTCTCTCCAGACCCCCAATCTAGATTCTGAATGATCTGCGGCTATAGGTAGACTAATCCCCATTGGTTTCCTTACTCTGGCGCTACACTCAGTCCTACGGAGTATTTTTATACGCTATGGCAGAGCACTGTGTGAAAATACATGgcttattatttttgcaatctGTTTATGTGAATCTTTCCCTGAGCACAGTTGCTTTGGCAGagattgtgttttattcatgtcAGTTACAGTATTTAGTCAAATCCTCTGTCCATGGACAGACGCGATAGAGTTAAGAAGTCACCCTAAAGACTTGTAATACGTATGTTATTGGTCATTTAAACAAGAAGCTGATTCATTTAAGTCTTTGCCAGGTTTGAAACTATTGGGACATCAGCTACTGGGattgtagtagcagtagcaggGTTTTTAAAGTTTAACTGGATGGAGAACGgcacagagaagagagagagacggccCTGGACTCATTTCTAAGGATGTTTTATGGGAATTGTTGCTCTTCAAGAGTATCTTGGGCTTGAGTTTCATGATAATAGAGATCCAACGTCACACTGTGCGTATTACTGTCTGTGATATGAGTAGAGAGGTGCAGGGTGCCGAGGGATGGTTCGAGGCTTGCCGGCTGTCACTGCGCACCCAAACACAATTCTGGCATTTGACTGTGGGTGAGAGTCCTGGTGGTGAGAGTGGTCCTGATGTATTGACACAGGAGTCTCTTACTTGAAGACGGCTTCTGTAAGAgctgatgtttgttttagtcGAATTCTGCATTTTCCCCTCATTAAGTTATTAattgggatttttttgttatatttctctgttgtattttaagtttgttttgtcCTTAATCCACCTCTTCTCAAAAACACGTTGacccttgttttattttgatgcagGACGATGTACCATTCCACTAGGTGAATTAAGgagattttaatttctttcagtactgtaaagtttttgtttatttgaaggtGGTCATATGTATTAACTGTACAGTgtacaataaagcaaattataatttgtatttaactaTCACACTGAGTAGCAGTGATCAGTTGTTCAATAAGACTAAATAACCTGTATCCCTAAacataatgataaataaaatacttttttgtttaaaaaaaa

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013826 True 4577 mRNA 0.51 10 44104171 44123031

Neighbor

gene id symbol gene type direction distance location
AMCG00013824 NA coding upstream 407846 43687352 ~ 43696325 (+)
AMCG00013818 NA coding upstream 428930 43672233 ~ 43675241 (+)
AMCG00013816 NA coding upstream 435687 43657227 ~ 43668484 (+)
AMCG00013821 NA coding upstream 472573 43630468 ~ 43631598 (+)
AMCG00013817 NA coding upstream 483462 43618051 ~ 43620709 (+)
AMCG00013827 rhoc,rhocb,LOC106582735,LOC105908082,LOC107668165,LOC108271788,LOC108427591,LOC107679717,LOC107569805 coding downstream 22440 44145471 ~ 44150277 (+)
AMCG00013829 NA coding downstream 80383 44203414 ~ 44221190 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding downstream 406687 44529718 ~ 44530827 (+)
AMCG00013834 NA coding downstream 512448 44635479 ~ 44661638 (+)
AMCG00013837 NA coding downstream 572748 44695779 ~ 44696771 (+)
G47040 NA non-coding upstream 184204 43919669 ~ 43919967 (+)
G47032 NA non-coding upstream 392160 43700924 ~ 43712011 (+)
G46949 NA non-coding upstream 640165 43462771 ~ 43464006 (+)
G46940 NA non-coding upstream 652156 43432376 ~ 43452015 (+)
G46941 NA non-coding upstream 660875 43441497 ~ 43443296 (+)
G47080 NA non-coding downstream 99377 44222408 ~ 44223401 (+)
G47106 NA non-coding downstream 166026 44289057 ~ 44291796 (+)
G47107 NA non-coding downstream 175238 44298269 ~ 44298664 (+)
G47110 NA non-coding downstream 206262 44329293 ~ 44329547 (+)
G47158 NA non-coding downstream 838578 44961609 ~ 44963472 (+)
G46945 NA other upstream 663473 43438492 ~ 43440698 (+)
G46862 NA other upstream 1014528 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 1059735 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 1442327 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 1455417 42644987 ~ 42648754 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 911741 45034772 ~ 45095669 (+)
G47206 NA other downstream 1203627 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 1693341 45816372 ~ 45823228 (+)
G47398 NA other downstream 1811628 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 1820540 45943571 ~ 45959194 (+)

Expression


Co-expression Network