AMCG00013838 (si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110)


Basic Information

Item Value
gene id AMCG00013838
gene name si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45034772 ~ 45095669 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013838
CAGCTGGCAGTGGGGACCTGCGAGATCGTCATGCTGAATCGGGACAGCAGCCAGCCCCGCAGGACCATCGCCCGGCAGACCGCCCGCTGCGCCTGTCGGAGGGGGCAGATCGCGGGAACCACACGGGCCAGGCCTGCCTGTGTAGACGCACGCATAGTGAAGAACAAGCAGTGGTGTGAGATGGCGCCATGCTCGGAGGGAGAGATCTGCGGGCTGCTCATGAACCGCTCGGGCTGGACGTGCACCAAGGGGGGTGGCAGGATAAAGACCGTCACGGCCCCGATTCGGTCCAGCTCATGA
>TU58815
ggagggggcaTGCATCTCCACGCGTTTCTTACAGCTCTTCTCTTGTCTCTTCTTCGGCTGGAGCCTGGCTGTGCTGCGCGCTGGTCGGGACGTCTCTGCTCGGAGCTTCACCGGCTGCCCCTCACAGCAGCAGCCTGGCACGGCTGACCGGACGCCTTCTCCGGGAGTGGATCATTACACACAGGGATCAATCCCGCCGGCTACAGCTGCTCCCGGAGACCAGCATCCCTGACGCAGCAGCCCTGGGGCAGAGTCCAGCCCGGGCCAGGAGAGCGGAGCGCGGCGCGGCGGGCTCCGGGAAGAAGAGCGCACAAGCCGGGCGACGAACGGAGCGGCAGACTGGGGAGACATGGGCGCTTTTCCTAGGCAAGCACCGAGGATCTGAGCAGGGTCTGAGCAGGGCTGTTATGGGAGACAGGGGGAGGAAAGAGCTCCGAAGAAACCTCCAGAACAGGCACCAGAAAGCATGATCTCCTTCCTTCTTTAATTCCCCGGTACTTGGCGGTCTCAGCGGAGGGGATGGCGGTGTGAGATGTGCGCAGCCGGAGAGCCCGGGTGTTGGAGACGTGTGCGCACTGAGCGCAGAGGACGCGCTTTCTTCCAGCCCGGAGATGCGGCAGAGGGTGTCAGGGGCATCCGTGTCTGTACCCACCGTGTCCCCGCAGCCATGGGGGGGTCCTGGCCATTCATTGTCTCCATCTGAACTGGGATGTTACAGCATTGTTGACGAGGACGCGTTGTAAAGACGATGACATCTTTCTTATAGGAAGCTGGGCACCTCTGGCAACCGATGAAGATTTCCtattgtataaataacaatacagatCTGTATACCTATATACAGAAGTGCATCCAAAGGAACTTGCACCGACTTCCCCCTATGGATTTGTCCCCCTTCGTTTAaattattgattcatttaaatatatctattttttgcCATGCTTTggacaagaaaatacaaatgaacGACTGCACTCTTTGATTTTCATGTGATCGGATTGGTTTCCTCCACAGATAACTTTTTGGTCCATTTTGATCATTATCCGCGTTGTCGTTACACTAGGAGGGCTTTTCCTAAGGATTGCGAGACCTGTGGGATTACCCGCCGGCGGCTGGGGAGAATGCAGGCCGGCGTGAGAGCGCTGTGCGCCGGCGGCGGAGCCTCTCTCTGCTGCCTCCTCCTGCTGTGGGTCATCTACTCTCACTTACTGAAAGAAGGCCAGCTGGCAGTGGGGACCTGCGAGATCGTCATGCTGAATCGGGACAGCAGCCAGCCCCGCAGGACCATCGCCCGGCAGACCGCCCGCTGCGCCTGTCGGAGGGGGCAGATCGCGGGAACCACACGGGCCAGGCCTGCCTGTGTAGACGCACGCATAGTGAAGAACAAGCAGTGGTGTGAGATGGCGCCATGCTCGGAGGGAGAGATCTGCGGGCTGCTCATGAACCGCTCGGGCTGGACGTGCACCAAGGGGGGTGGCAGGATAAAGACCGTCACGCCTTTACCCAAGGAACCGTCTTAAAGTGTTCAGATATGCAAGGGGAGgtttcCTGACAGTCTTGGGAAATAGGAGAGATATCATTACCAGGCAGCATCGTGTCTCCACTCAACCGTACCTCTTCTGATGCCCACCTCTCTGTGGAGCTCACCATCTGTTGACTGTCCCCCCAGTTCCACCTACTCCACACCCAGCCAGAGACGGaccaccccctgccccccccaccaccctcacCTCCCAGCAGGCCAACACACCGCTCTCCCCAAGCCCACGAGCCAGCCAGCCCTCCAGACAGACGGACAGCCAGAAAACCATCCGCCCCACACGATGTCCGAGTCTGGACCAGCTTCAGCCACCAGTCTGGACTCAAGCcctttctctgtccctctctctccctctctctctctcactctctctttctcactgtgtcactctctccccctcctcctgtTCCAGAACGAGAGATGATACAGCTGGGGAAAACATGGGTTTCCTTCTATGtttatctttcctttttttacatATGGTTATTTTGAGTGAGACGACCATCTGTTCTCAATCTGGagctttacat

Function

NR:

description
protein FAM19A5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013838 False 300 mRNA 0.66 3 45059096 45065520
TU58815 True 2071 TUCP 0.57 6 45034772 45095669

Neighbor

gene id symbol gene type direction distance location
AMCG00013840 LOC104957825,LOC107725284 coding upstream 94611 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 115511 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 338001 44695779 ~ 44696771 (+)
AMCG00013834 NA coding upstream 373134 44635479 ~ 44661638 (+)
AMCG00013833 kcnd3,LOC101073956,LOC102776651,LOC102303593 coding upstream 503945 44529718 ~ 44530827 (+)
AMCG00013841 LOC101476397 coding downstream 250938 45346607 ~ 45353929 (+)
AMCG00013849 kif21b coding downstream 324244 45419913 ~ 45431617 (+)
AMCG00013848 LOC106582687 coding downstream 347417 45443086 ~ 45456185 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 395068 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 456304 45551973 ~ 45569316 (+)
G47158 NA non-coding upstream 71300 44961609 ~ 44963472 (+)
G47110 NA non-coding upstream 705225 44329293 ~ 44329547 (+)
G47107 NA non-coding upstream 736108 44298269 ~ 44298664 (+)
G47106 NA non-coding upstream 742976 44289057 ~ 44291796 (+)
G47080 NA non-coding upstream 811371 44222408 ~ 44223401 (+)
G47184 NA non-coding downstream 172385 45268054 ~ 45268386 (+)
G47186 NA non-coding downstream 184085 45279754 ~ 45281095 (+)
G47188 NA non-coding downstream 187723 45283392 ~ 45283600 (+)
G47189 NA non-coding downstream 188171 45283840 ~ 45284159 (+)
G47190 NA non-coding downstream 190847 45286516 ~ 45286853 (+)
G46945 NA other upstream 1594074 43438492 ~ 43440698 (+)
G46862 NA other upstream 1945129 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 1990336 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 2372928 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 2386018 42644987 ~ 42648754 (+)
G47206 NA other downstream 230989 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 720703 45816372 ~ 45823228 (+)
G47398 NA other downstream 838990 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 847902 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1941426 47037095 ~ 47073708 (+)

Expression


Co-expression Network