Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00013846 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 45338859 ~ 45344015 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0038066 | p38MAPK cascade | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0045663 | positive regulation of myoblast differentiation | biological_process |
| GO:0010831 | positive regulation of myotube differentiation | biological_process |
| GO:1901741 | positive regulation of myoblast fusion | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004707 | MAP kinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00013846 | True | 696 | mRNA | 0.70 | 3 | 45338859 | 45343600 |
| TU58873 | False | 361 | lncRNA | 0.47 | 2 | 45343301 | 45344015 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00013845 | LOC103370234,LOC108436315,LOC103028137,LOC108246862,LOC104939458,LOC106513331,LOC108254806 | coding | downstream | 9680 | 45316447 ~ 45329179 (-) |
| AMCG00013847 | NA | coding | downstream | 23158 | 45315172 ~ 45315701 (-) |
| AMCG00013844 | LOC108265696,LOC107725303,LOC107598961,LOC107734522,LOC107570980 | coding | downstream | 24034 | 45295506 ~ 45314825 (-) |
| AMCG00013842 | NA | coding | downstream | 50257 | 45279776 ~ 45288602 (-) |
| AMCG00013836 | NA | coding | downstream | 605114 | 44730857 ~ 44733745 (-) |
| AMCG00013843 | NA | coding | upstream | 15172 | 45359187 ~ 45373711 (-) |
| AMCG00013856 | NA | coding | upstream | 260811 | 45604826 ~ 45615255 (-) |
| AMCG00013859 | NA | coding | upstream | 272120 | 45616135 ~ 45621865 (-) |
| AMCG00013861 | NA | coding | upstream | 292913 | 45636928 ~ 45638791 (-) |
| AMCG00013857 | LOC107698281 | coding | upstream | 295815 | 45639830 ~ 45647135 (-) |
| G47185 | NA | non-coding | downstream | 70463 | 45268054 ~ 45268396 (-) |
| G47180 | NA | non-coding | downstream | 233972 | 45104223 ~ 45104887 (-) |
| G47168 | NA | non-coding | downstream | 371931 | 44966010 ~ 44966928 (-) |
| G47162 | NA | non-coding | downstream | 375379 | 44961849 ~ 44963480 (-) |
| G47153 | NA | non-coding | downstream | 528983 | 44809645 ~ 44809876 (-) |
| G47259 | NA | non-coding | upstream | 278500 | 45622515 ~ 45622755 (-) |
| G47358 | NA | non-coding | upstream | 481708 | 45825723 ~ 45826654 (-) |
| G47359 | NA | non-coding | upstream | 483950 | 45827965 ~ 45828251 (-) |
| G47365 | NA | non-coding | upstream | 501834 | 45845849 ~ 45854800 (-) |
| G47391 | NA | non-coding | upstream | 577091 | 45921106 ~ 45922914 (-) |
| AMCG00013820 | tmem167b | other | downstream | 1724280 | 43609282 ~ 43614579 (-) |
| G46742 | NA | other | downstream | 2637791 | 42699506 ~ 42701068 (-) |
| AMCG00013773 | NA | other | downstream | 2883101 | 42428777 ~ 42455758 (-) |
| AMCG00013732 | NA | other | downstream | 4701631 | 40618343 ~ 40637228 (-) |
| G46423 | NA | other | downstream | 4730331 | 40603601 ~ 40608528 (-) |
| G47261 | NA | other | upstream | 279223 | 45623238 ~ 45623895 (-) |
| AMCG00013882 | cry4,LOC108413014 | other | upstream | 575621 | 45919636 ~ 45928309 (-) |
| AMCG00013883 | NA | other | upstream | 618175 | 45962190 ~ 45974311 (-) |
| AMCG00013890 | cacna1s | other | upstream | 731414 | 46075429 ~ 46083542 (-) |
| G47501 | NA | other | upstream | 816524 | 46160539 ~ 46163487 (-) |
