AMCG00013848 (LOC106582687)


Basic Information

Item Value
gene id AMCG00013848
gene name LOC106582687
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45443086 ~ 45456185 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013848
GGGGTGATCAGCCCCGTGGGGGGGGTGAAGGGAGGCAGGACGGCACCCTTGCAGTGCGTCTCGGTGGCGGAGGGCCACTCCAAACCTGTGCTGTGTCTGGATGCCACGGACGAGCTGCTTTTCACCGGATCCAAAGATCGTACCTGTAAGATGTGGAATCTGGTGACCGGGCAGGAGATTGTCACCCTGAAGGGTCACCCCAACAACGTGGTGTCTGTGAAATactgcagcagctcctgccTGGTCTTCACGGTCTCCACCTCCTTCATCAAAGTGTGGGACATCCGAGACTCGGCCAAGTGTGTGCGGACCCTCACGTCGTCGGGTCAGGTGATCTCGGGGGACGCCTGTGCCGGCACTACGACTCGCACCATCAGCACAGCCCAGGGAGAATACCAGATCAACCAGATTGCCCTGAACCCAGCTGGCTCCATCCTGTATGCAGCTACTGGCAATACGGTCCGTACCTGGGACCTGAACAGgatgCAAGCTATCGGGAAGCTGACTGGCCATATCGGCTCTGTCATGTGCCTCACTGTGGGTCAGTCCATGGGTGGCAAGGACCAGGTCATCACCGGTTCAAAAGACCATTACGTCAAGGTGTTCGACGTGGCTGAAGGTACAGTGGGCAACATGGGGCCGGCCCACAACTTTGAGCCGCCACACTATGATGGCATCGAGTGTCTGGCCATCAACGGGGACATCCTGTTCAGTGGCTCCCGGGACAACGGCATCAAGAAATGGGACCTGGAACAGCAGGAGCTCATACAGCAAATCCCCAATGCCCACAAGGACTGGGTGTGCGCTCTGGCCTACGTCCCTGGGCGGCCCATGCTGCTCAGTGGCTGCCGGGGGGGCATGCTCAAAGTGTGGAATGTCGAGAACTTCACCCCCATCGGAGAGATTAAAGGGCACGACAGCCCCATCAACGCCATCTGCACCAACTCCAAACAGATCTTCACCGCGTCCAGtgacATGTCTGTAAAGGTCTGGCGTGGGAAGATTGGGAAGGGGAGGTGAAGCTGTTGATCGGTGGATCTGTTGATGTTCGGAGGGTCCACCACTTGGCTCTGAGGCTGAACCGTAGGAGAGGGGATGGgatgggaggagagaggagaggaggagggcggCCTCTCCTTTCCCTTGTCGCCTGCTGGGGTGCTGCAGCAGTACACTCGATTGATTTCCATCTATCTGGACTGCGCAGTGAGATCGATCATCCTCCCCAAGGCGTATTCTCACGGATGGTAGAGAGGTGGAACAGGGATGTGGCAAATGACTGCTACTCAAGACATCTGATCTTGTAGTCCGACTGATTATTTTACCATTATTCTTATTGTAGACAACTACCTTTGCACTACTGCAAATTGTTGGGCCATACCTTTGAGCAAAACGTGATCTGCAGCACAGACGTGTGGGGGTTGGGTGACGGAGTGAACCCCTTAAATGCAATCTGATCTTACCGTTCTCGGATGACAACGTGACGAACACTTTAACGTAAAGCTGGACAACTCCGTATTTAGGGATGTCTGTAGGACGATCCGCACAGGTTTCTGATGTGCGGAACTGGATTTGGCAGAATTTCGAAGtgccattttttgtattttgacacGGGCATCGCTACAGCTTCCAGACCTCAGTGTTGacctgctgttatttatttaactgttttgGAAAGAGGGGAAACATCTGACTCCTGTCATCTGCTCAGAGTCGAACTGAATGGGAGGTTCAGGGCGGGAAGATGCACAATTCACACTGACCACACCCACATCCCGGGAGTGACGCTTCTTACTTCTGTTCTGATTGGCTGACGAAAATCATCATCCTTGGATTGGAGGGAGTCGGCCTAGGAGAATAGATTTCTCTCTTTCAATCTGTTTGCACACCATTCTCGACGGACCTTGCTTTGGTGATGAGAGTCCTTGCCTTTCCAGGTCAAATACCATGAAATAGTTGTCCGGAAAGGCGAAGAAGGGAACCAAATGAGACGATTGCATATGTTGTGTAGCACCTCTGTGCTTTGGCtcctgcttgtgtgtgtgtgtgtgtgtgtgtgtgatgacaGAAGCACAGTGCTGAACACAGACAGATCTCTACTGTACCTGGGGTTTGCAGCTGGATCCTGTCTTCAGTGACCTTAATATTTTCTTGGTGCTTTTCCAACCTTTTTATAGTCACAAAGTACAATAGCCTCCCTGCGTTTTCATGTGTTCCTctgagaaaaactaaacaacacaagaaaaaaagaaaacgctgCCCTATGTATCTATTGTTGGTTTtcagttattgttttctgtgaatTTTATGTTAGCTACCTCAAGCAGACAAGGAATCTGAAAGGTACTTGTAAAAACTTGACCGTTAAGTTAGCTCACTCTTTTACCGTGCCTGCTAACTCTAGGTGTGTTTATTTCTTGGACGTCTCATTCCAGTTTAAGGACTTTCTCTAAAATGGTGTCTTCTGGCTTGTGCCCGGCTAAGCTTTGATTGGAAATTACAGCTGTAAATAACTTTTACTACGCACACAGCCCTACTTGCGTTGACGTACGGCGCTCCACTGCACGGCACGGACCGGCAAGTTTATATACCGTTCTCAGCTGCTCTGGAAGCGCTGCAGGGAGGGTAGGGCTATAGATTACTTGCTCTCATTGCTTCCCTGACATTAAGGCTTTTATACTTCAGCTCTGCAACAGCGTGTCACTCGCATATCTTTTAATCAGTTTGTCTGTCCGTTCAGGAAGATTAGATTCGTTCAGCTACAGGATTTGGAGGCAAGGCACTAAATTCCTACCAGAGGGTGAAAGAGGAACGAATTACATGCAATTTCTGAAAACACCCGCCACCCCGTACAGCCAGAATCAAGCAGCCTGTCgcaaagttaaaaacaaacatcagatTTATCATTTACAATTGGGTGTCTGCGCTGTGACGGTTCAGCCGCTTGACCCTGCAGTCTTTACACATCTTTTGGGGAACTAAATCTAGAGCACGCGGTTCTGTAGAATGCACATTTTGAGAAATATTGCACAGCCTAAATTATAAGAGGGCGATATCTGTGTGGGAAAACATGTCCAATTTAATTTCACACAGGGAActagataaaaaataaacaatcgaAAGTCTGCTCGGAGTTACCTGATAAAACATTCAGTCAGCTGCGAAGTGGCTGTGGCGTTTTGATTATCTGGGGGCCATGTGCTCCTCGGCAGATTTGTGCATGACAGTGCTCCCTTGAATATATAGGTCGTTCCCATTCTCCTCTGGCTTGCCGATCTTCCGAACCACAGATTTACAGCctttgaaacatttctatctGGATATTTGCCGCCGGGGTGTCAGTCCTTCGTTGTGGATTGCCCCTCAGACAGTCGGTCTGTCGCCGTATGGAATCTTAATGAACGGCACGTGTTGATCgaaaaaacaaattcattcCATTTCCTCTCGGCGTGTAGAAGGAAGCACAGTTTCACGGGATCTAATGACTTATAAACGGGCGCTGTTGATGTTCAGCAAAAGACAggaagaaagagggggagaaagaggagaaaataaattggtCAAGATTACACTACAATACCTGTAGTTTAGAGCTGAGGAACCCTGGTCCTCAAGGGTCACAATCCTCACGGTTTTGTAGGTCTCTTCAGATCCCCACTGGTACACACAGTGTTTGCATGGTTCAATTTACTTAATTGGTTCAATGAAGTAATGGGGATTGGAACCAGAACTAGAACACATTGTGACCCAACTGCACCTGAGTTGCCCATCACTCTTATAGGTCCTGTAGTTTAAGATGATATTGATTGTGGTATAGAGACAAGCTCGTTGGGTCTCTGTTTGTGCGAGTCAGTCTTTTTCTACAGAAACCAGACAGGGGTGTTCCCACGGACCGCCAGAGATGATATCATAGACATGCTTCTCCTATAGACGCCAGCTACCCAGCATCCTCCTCGGATCGAGGCGTGGGCCGTGCCGTTGCTGCGCAGGCTTTgcgagttgttgtttttttatcattttgtacCAATTGATTCCTTAAATGAAACTAAAGAATTGCTATTGGTGCTAAAGGACGGTGGCGCCTGCTCCCTGGCGCCGGAAGATGGATGTAGCCGGTGCGGGGGGCCCATCTCCGCCGGGACGCCCCCGCGTGTGGCTCGCTCGTGCCCGAGACGTCGCAGCGATCCTTGACAGCTCTGCTTAGACGACTCATTTGTCTCGCTGCGGAGACCACTGGAAGCTGACAGGCAGACGCTACAACTGGAATGGATTGGGCTGTCTGTTTCTAAATGCCTACATCTCTAGCTGTGCCAATAAATATATCTGTAGGTGCTTTCAGAATTAAAACGCAAGCTTTTTTGCAACACTTGAATTTCTTTTTTGTAcaatttttaatctttattttgtatttattttgttttgtttttgtttaaatcattGAGCCAGTTATCAGTCAGTACTGTAGAGGAAGCTAGGTAGTAGCTTTCCCAAATGAGCAAGCTAAATGTGACTTAGCTGTACAATAACTCTGTATagatctgtgtgtttctgttattcTGTATATAGACGTGTCTGTGCCTGCTATCTATGCTGTATTGAGTTGGAGGGAGGGTTGGGGTCTCTTTTAAGAGGCTACTGACACACGGAGAGAGCAAAGTGGCCCTGATGTGACAATTTAGTAGATTGGTCCTGGAaagttcaaatgtattcatccTGTGGTGGGCAGAATTATCATCAGCTGCCTTTGGACAAAAGTGTTGTGTCTCATTTTTCTACGTGTTTGGTGACCTGGGTTTGCATCTCCTGTTATGGGGAGGCACCAATAATACAGAACCAGATCCTAAAGAGCAGTCCAGTTAAACCCACATCATTTGCAATGCTAATGAGCGTATTTTCCACTGTGTTAATTAGTAGAGGAAGACATTAGGGATGTCCAAAAAACAGGGGAGACCTGCATGCTCCTCAATTTAGGAAAACCAAGACGACGCACAGTGTGTTTACTACCAAACCCAAGCCTTATTAGTTTCTTATCCTCATTACATTTATTGGCCTTTTTAATTTCGCACCAAAGATGGGCCGGAAATCAAGGACAGTGATGGTGTGATGTCTGCACGACGGACCCTCTCTCGTCCCTGTAAATGGACCCCGGACGCTCTCGCTCTCCCGGTTCCGGTCGTTGGTGCGAGAGGTCTGAGCATCTGTTGGTCTTCTGAACAAATGCTACTGCCTTAGGGGGAGTGCTGCAGTATGCTCCAGGAGCTTGGGTCTCTAGTCTTCACACACGGTCCAAAGGGTACCGTGCGATTGTGTGTACTGTCAACACGTTGCAGTGAAAGTTTTGTGACTGAGAAAAGTGTGGTGAGATACTGGAGAAAAGTGATCGACTACCACTTACAGAGGCACTGGGATCAATACGATGACCTGAGACTAGAGGTTTTTCTGGAGGTGGGTTGTGATTGAGGAACATCGACCTGTTCAGTGCATTCTTAGATTTTGTGGAGAACCCATTAACAATATTATCAATGCCGATGCTTTAAAAGGTGCTCAATAGGAATCTTTGTGGGAGGAGATGATTCACACTGGTTGCACTGCACTTGCACTAAAGATGTGATTTGAAGTGAGACAGGATGTGAAAAGTAGCGAGTTGGGAAAAGCTTTCAAACCTCATTTTGACCTCGACACAGCACCTTTTCACTTCGATTTAAACAAACGCTCCCTTTGTGGAAGCCTGGATGTGCCAGATTAACTGGGATGATGGAAAATGTTGGTTACATCTGCAACACTTTACGACTCTTAGGAAGATGGGTTTACATGCTATGGTTATGTTTAGATTAGGAAATGCACTGAATTAATGTagttgtggttttcattttcatttgtactGCATATTTATTAAAGGGTTGAGCAGCTGCAGCCATTACCCGTTTGATCTTTGACTGGGAAACGGCAACTGAAGGCTGAATGCATGTTGATAAAATGGGCTTCTGGGCTCTAATTCAGCTGATGCATTAAATTGGATTCTGATTATATTCTCTTAGCGTGGGAATTGAAAACTACATTGCAAACAGTGTTGATGCTGCTATGTGCTGTGGACAATTACCCCTGCGCTGCCCCAGTGCTGTGTGTAAATGTCTCCAGATTGTATGTGCCAAGTCCCATTTGCCCCGGTATCTCCCTGAAGGAAAAATGGCATCGCTGAGCAAACTACGTGCTGAGCACTGGTTTAGTGACAGGGTCAAAGGTGCCTTTTATTGCACAGAGTTTAaggaatgtaaatgtttgtacagatttaattaaatattattgttgtgtgtgtgaccaGACTGTATgtacaatatttgtaaatactgtaaaaacctttatttaattaaaatgtttttgtttttaaatgtttattgttcATGATGTGAAAGTAAAACGGAACAAAACTTAAAACTGgaa

Function

NR:

description
PREDICTED: kinesin-like protein KIF21B isoform X4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013848 True 6441 mRNA 0.47 7 45443086 45456185

Neighbor

gene id symbol gene type direction distance location
AMCG00013849 kif21b coding upstream 11469 45419913 ~ 45431617 (+)
AMCG00013841 LOC101476397 coding upstream 89157 45346607 ~ 45353929 (+)
AMCG00013840 LOC104957825,LOC107725284 coding upstream 502925 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 523825 44901032 ~ 44919261 (+)
AMCG00013837 NA coding upstream 746315 44695779 ~ 44696771 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding downstream 34552 45490737 ~ 45494667 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 95788 45551973 ~ 45569316 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding downstream 142538 45598723 ~ 45602192 (+)
AMCG00013853 NA coding downstream 172202 45628387 ~ 45633476 (+)
AMCG00013855 NA coding downstream 178927 45635112 ~ 45636569 (+)
G47194 NA non-coding upstream 88672 45295503 ~ 45354414 (+)
G47192 NA non-coding upstream 150186 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 156233 45286516 ~ 45286853 (+)
G47189 NA non-coding upstream 158927 45283840 ~ 45284159 (+)
G47188 NA non-coding upstream 159486 45283392 ~ 45283600 (+)
G47232 NA non-coding downstream 113224 45569409 ~ 45574313 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding downstream 159948 45616133 ~ 45620232 (+)
G47258 NA non-coding downstream 166402 45622587 ~ 45622806 (+)
G47262 NA non-coding downstream 168187 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 183679 45639864 ~ 45641637 (+)
G47206 NA other upstream 82204 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 347417 45034772 ~ 45095669 (+)
G46945 NA other upstream 2002388 43438492 ~ 43440698 (+)
G46862 NA other upstream 2353443 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2398650 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 360187 45816372 ~ 45823228 (+)
G47398 NA other downstream 478474 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 487386 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1580910 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1763734 47219919 ~ 47227969 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location