AMCG00013851 (LOC101073987,LOC107714485,LOC106582685,LOC105898132)


Basic Information

Item Value
gene id AMCG00013851
gene name LOC101073987,LOC107714485,LOC106582685,LOC105898132
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45490737 ~ 45494667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013851
ATGTGCCGAGTGTCAGAAAGCCTGGCTGAACATACTGTCGATATTTATCAGTTTGGAAGAACTGAAGTGATTGACAACACGCTCAACCCCGACTTCGTCAGGAAATACATCCTGGACTACTTCTTTGAGGAGAAGCAGAATCTTCGCTTTGACTTatATGATGTGGATTCTAAGAGCCCTGATCTCTCTAAACATGACTTTCTGGGCCAGACCTTTTGCACCCTGGGAGAGATCGTGGGCTCCCCGGCCAGCCGTCTGGAGAAACCCCTGAggtga

Function

NR:

description
PREDICTED: copine-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013851 True 276 mRNA 0.49 4 45490737 45494667

Neighbor

gene id symbol gene type direction distance location
AMCG00013848 LOC106582687 coding upstream 34552 45443086 ~ 45456185 (+)
AMCG00013849 kif21b coding upstream 59120 45419913 ~ 45431617 (+)
AMCG00013841 LOC101476397 coding upstream 136808 45346607 ~ 45353929 (+)
AMCG00013840 LOC104957825,LOC107725284 coding upstream 550576 44933300 ~ 44940161 (+)
AMCG00013839 NA coding upstream 571476 44901032 ~ 44919261 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding downstream 57306 45551973 ~ 45569316 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding downstream 104056 45598723 ~ 45602192 (+)
AMCG00013853 NA coding downstream 133720 45628387 ~ 45633476 (+)
AMCG00013855 NA coding downstream 140445 45635112 ~ 45636569 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 158686 45653353 ~ 45656372 (+)
G47194 NA non-coding upstream 136323 45295503 ~ 45354414 (+)
G47192 NA non-coding upstream 197837 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 203884 45286516 ~ 45286853 (+)
G47189 NA non-coding upstream 206578 45283840 ~ 45284159 (+)
G47188 NA non-coding upstream 207137 45283392 ~ 45283600 (+)
G47232 NA non-coding downstream 74742 45569409 ~ 45574313 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding downstream 121466 45616133 ~ 45620232 (+)
G47258 NA non-coding downstream 127920 45622587 ~ 45622806 (+)
G47262 NA non-coding downstream 129705 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 145197 45639864 ~ 45641637 (+)
G47206 NA other upstream 129855 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 395068 45034772 ~ 45095669 (+)
G46945 NA other upstream 2050039 43438492 ~ 43440698 (+)
G46862 NA other upstream 2401094 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2446301 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 321705 45816372 ~ 45823228 (+)
G47398 NA other downstream 439992 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 448904 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1542428 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1725252 47219919 ~ 47227969 (+)

Expression


Co-expression Network