AMCG00013853



Basic Information


Item Value
gene id AMCG00013853
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45628387 ~ 45633476 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00013853
ATGTCAGCAGACGGAAGGATGCCGCAGAAGACAAAGAAGAGGAGTTGGATGCCGGGGGACAACTACGACCAGAAAGTGGACCAGCGCGTGACAAGGCACGAGTATCTGCGGAGCCGGCTGAACGTCACCACCTGCCGCAACGACGTGGCCACGCGGGACTCCGAGTGGCGGAGTGGGCAGCAGCGCAAGAGGCAACAAGAGTTCCTGAAGAGGAGGCAGATCAGCCAGGCGGTGGGGAGCGGCGAAGAGGAGAAGCCGCAGGGGCCCACCGTGGTGTTGCGGTCCCATGAGCGCCGGCCGCCCCTGCTGAACAGACGCTCCTTGGTGATGTCACAGGAGCTGGGGATAACGTGGCCGGATCTCAGCTCTGTGGAGGAGGTCAGTCCCaatagtGCACCGTGGCTCAGTCCCTCTCGGTGGAAGGAGAGCAGGACAGTGAAGCAGAATGTCCTTTCGGGCGGCCCAAGCCAATGCATCTCTGCTCCCCTGCGCCACCAGcccctgagagaggagagagtgacGCAGAGAAGAGAACGAGGTGCGTCTCTGCAGCACAACAGCTCTGTCCTTCGGTCGGGCTCGCAGTCTTCTAGGAGTGGCATCCAGACAGTGAAAGAAAAGGAGATTCTGGAGCTATCAAACTATCTACGGGAAGCCCTGCAGCGAGAATCGGCTCTCAAACAGAAGCTGTCCGTCCTCCAGCACATCGCCTCCACCCTGCTGCTCTCCTCCGACAAACTGTGGACGACTCGGTGCAATGAAGACCTTATGAAATGCAAGATCGGGTCTCTGGAGGCGCAGCTGcaagtgtgtgtgcagAAGTATTCTCGGGATGGTGTGAAGAGGGCGTTGCTGGAGATGGAGGAGCAGAAGATAAAGTATGAGGAGAAAGCCAAGGTGTCCATTCAGAGAGCCATCCTGGACAAGCAGGCCGCTGAAGAGAAACTGGAGGGGCTGCAGGAAGCTCTTGTGGCTGCCCAGAGGGAGGCCGCTCACTGGCAGGGGCAATATGAGGAGATGAGGCAGAGCTGCACCGAGCTCAAGAGGAGCCACGAGCTCAACATGGACCAGCTACACCTACTACAGAGCCAGCTGGAGCGAGCGGCCGGGCAGGAGGCATCTCTGCGGGGACAGGTGGAGACCCTGCGGCGAGACGGGGAGGAGCTGCTGTCCCAGATCTCTGCCCTGCAGGAGGACAACCACCTGGCGAGAGAACAGCTGGATGCCGTGAGAGGTAGACCCCAGCCCCCTCGATACATCTGA

Function


GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00013853 True 1263 mRNA 0.60 9 45628387 45633476

Neighbor


gene id symbol gene type direction distance location
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 26195 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 59071 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 133720 45490737 ~ 45494667 (+)
AMCG00013848 LOC106582687 coding upstream 172202 45443086 ~ 45456185 (+)
AMCG00013849 kif21b coding upstream 196770 45419913 ~ 45431617 (+)
AMCG00013855 NA coding downstream 1636 45635112 ~ 45636569 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 19877 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 48604 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 86744 45720220 ~ 45740542 (+)
AMCG00013873 NA coding downstream 160059 45793535 ~ 45798941 (+)
G47262 NA non-coding upstream 3816 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 5581 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 8155 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 54074 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 273973 45295503 ~ 45354414 (+)
G47264 irf6 non-coding downstream 6388 45639864 ~ 45641637 (+)
G47320 NA non-coding downstream 148550 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 192836 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 217619 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 268391 45901867 ~ 45903185 (+)
G47206 NA other upstream 267505 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 532718 45034772 ~ 45095669 (+)
G46945 NA other upstream 2187689 43438492 ~ 43440698 (+)
G46862 NA other upstream 2538744 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2583951 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 182896 45816372 ~ 45823228 (+)
G47398 NA other downstream 301183 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 310095 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1403619 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1586443 47219919 ~ 47227969 (+)

Expression



Co-expression Network