AMCG00013854 (gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185)


Basic Information

Item Value
gene id AMCG00013854
gene name gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45598723 ~ 45602192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013854
CCCACTTCGAAGAGCCAATCGCAGGGGGCGCTGATGTTCACTACGTGCGGTGACCACGCCCAGGCCCCGCCCACCCGAGGGCGCTTCTTTGGGTACTTTGTAACGACTTGCAGAGCAGCGCCCGGTCACCGAGCAGAGCCGCCCGACTGCCCCGACTGCCCCGCCGCAGAGATGGCCATGAGATTAGGCTACTGGGATATAAGAGGGCTGGCGCAGCCCGTTCGTCTTCTGCTGGAATACACTGGCACCACATACGAAGAGAAGCTGTACTCCTGTGGAGAAGCTCCCGAGTTCGACAAGAGCTGCTGGTTCAATGAGAAGCCAAAGCTTGGACTGCATTTTCctaatCTTCCCTACCTGATCGATGGCGACAATAAAATCGTGCAGAGCAACGCCATCATGAGATACATCGCCCGCAAGCACAACTTGTGCGGTGAGACGGAGGACGAGAAGGTCAGAGTGGACATCATGGAAAACCAGGCGATGGACTTCCGTAACTCCTTCGTCATCATGTGTTACACCAATTTTGACGCGGCCAAGCCTGGATACCTGGAGAAACTGCCCGGCACTCTGAAGCAGTTCTCCGATTTCCTGGGGGAGAGGAAGTGGTTCGCAGGCGATAAGATCACCTTCGTAGACTTCATCATGTATGAGCTGTTGGACCAGCATCGCATGTTTGAACCCAAGTGCCTGGATGACACCCAGAACCTGAAGAAGTTTCTGGACAGGTTTGAGGGGCTGGAGAAGATTGCTGCCTACATGAAGTCCGAGCGTTTCATCAAAACCCCCGTGAATAACAAGATGGCAAAATGGGGATTCAAAAAGGAATAACGATGTTTGAGGAACTCGGTCacccaataaaaataaaagcacttgtATCGCTGTCCGCTTGTTTCTTTTAGACCCTGTTATTGCAG

Function

symbol description
gstm3 Enables several functions, including glutathione binding activity; glutathione transferase activity; and protein homodimerization activity. Involved in several processes, including cellular detoxification of nitrogen compound; nitrobenzene metabolic process; and response to estrogen. Located in cytosol and intercellular bridge. Implicated in several diseases, including asthma; bone cancer (multiple); cystic fibrosis; larynx cancer; and neurodegenerative disease (multiple). Biomarker of Alzheimer's disease; asthma; macular degeneration; and pulmonary emphysema.

NR:

description
PREDICTED: glutathione S-transferase Mu 3-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004364 glutathione transferase activity molecular_function

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013854 True 917 mRNA 0.53 8 45598723 45602192

Neighbor

gene id symbol gene type direction distance location
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 29407 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 104056 45490737 ~ 45494667 (+)
AMCG00013848 LOC106582687 coding upstream 142538 45443086 ~ 45456185 (+)
AMCG00013849 kif21b coding upstream 167106 45419913 ~ 45431617 (+)
AMCG00013841 LOC101476397 coding upstream 244794 45346607 ~ 45353929 (+)
AMCG00013853 NA coding downstream 26195 45628387 ~ 45633476 (+)
AMCG00013855 NA coding downstream 32920 45635112 ~ 45636569 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 51161 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 79888 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 118028 45720220 ~ 45740542 (+)
G47232 NA non-coding upstream 24410 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 244309 45295503 ~ 45354414 (+)
G47192 NA non-coding upstream 305823 45291273 ~ 45292900 (+)
G47190 NA non-coding upstream 311870 45286516 ~ 45286853 (+)
G47189 NA non-coding upstream 314564 45283840 ~ 45284159 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding downstream 13941 45616133 ~ 45620232 (+)
G47258 NA non-coding downstream 20395 45622587 ~ 45622806 (+)
G47262 NA non-coding downstream 22180 45624372 ~ 45624571 (+)
G47264 irf6 non-coding downstream 37672 45639864 ~ 45641637 (+)
G47320 NA non-coding downstream 179834 45782026 ~ 45800423 (+)
G47206 NA other upstream 237841 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 503054 45034772 ~ 45095669 (+)
G46945 NA other upstream 2158025 43438492 ~ 43440698 (+)
G46862 NA other upstream 2509080 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2554287 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 214180 45816372 ~ 45823228 (+)
G47398 NA other downstream 332467 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 341379 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1434903 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1617727 47219919 ~ 47227969 (+)

Expression


Co-expression Network