AMCG00013855


Basic Information

Item Value
gene id AMCG00013855
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45635112 ~ 45636569 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013855
ATGGGGACGGAGGCGTTTGCACAGGGGGATGTTAATCTGAGACACCAGCTACAAGACACAGAGCAGAAACTCGGGATGAAAGAGAAGGAATGCGCGGAGCTGCAGGCGGAGCTGGAGGAGATGGAGCTGGAGTGCCAGTCGTGCCAGTCGCGGCTGCACCAGTGCCGGGACGAGCTCAAGCTGCTGCAGGGCCGGCGGAGACAGAGGTGCTGCAGCGCATGGCTGTGTCTCCCCCTGCTGGTCCTGCTGCTGGCCCTGCTGGTCTCGGCTGCTTTCCACCCCCTGCTCTTCGAGCACATGGACGCCTCGTACCGGGCAGTGCGGTGGCACGTGGAGCAGCAGATCCACAGACTCGCCTCCGGGGAGCAGGGCGTGTGCGAGGGGCCCCCGGGCCGGGCCATCTGA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013855 True 405 mRNA 0.66 3 45635112 45636569

Neighbor

gene id symbol gene type direction distance location
AMCG00013853 NA coding upstream 1636 45628387 ~ 45633476 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 32920 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 65796 45551973 ~ 45569316 (+)
AMCG00013851 LOC101073987,LOC107714485,LOC106582685,LOC105898132 coding upstream 140445 45490737 ~ 45494667 (+)
AMCG00013848 LOC106582687 coding upstream 178927 45443086 ~ 45456185 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding downstream 16784 45653353 ~ 45656372 (+)
AMCG00013862 NA coding downstream 45511 45682080 ~ 45695028 (+)
AMCG00013863 NA coding downstream 83651 45720220 ~ 45740542 (+)
AMCG00013873 NA coding downstream 156966 45793535 ~ 45798941 (+)
AMCG00013869 NA coding downstream 164349 45800918 ~ 45802811 (+)
G47262 NA non-coding upstream 10541 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 12306 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 14880 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 60799 45569409 ~ 45574313 (+)
G47194 NA non-coding upstream 280698 45295503 ~ 45354414 (+)
G47264 irf6 non-coding downstream 3295 45639864 ~ 45641637 (+)
G47320 NA non-coding downstream 145457 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 189743 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 214526 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 265298 45901867 ~ 45903185 (+)
G47206 NA other upstream 274230 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 539443 45034772 ~ 45095669 (+)
G46945 NA other upstream 2194414 43438492 ~ 43440698 (+)
G46862 NA other upstream 2545469 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2590676 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 179803 45816372 ~ 45823228 (+)
G47398 NA other downstream 298090 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 307002 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1400526 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1583350 47219919 ~ 47227969 (+)

Expression


Co-expression Network