AMCG00013862


Basic Information

Item Value
gene id AMCG00013862
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45682080 ~ 45695028 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013862
gcgggggCCATTTTACCCTTCGTGTTCCCAGGGCAAAAGGAGGAGGGGAAAACAGAAAGTGGCGAAGTGCAGCCAATGCACCTGCCGCATACCGAGATACAGGAGACCCACAGGGAGACAGGTGCTTTTTGATCACATTGGTgggagaaaatatgaaaaagggGACTTTGACGTGGTTGGGTCGGAAACCCCAGTCTCTGTACGACACTAGTATCGAGAAAAGAGATTTGGACGATGTGGAGTTAGTCCTGGATTCCACTGCTTTTCCTGAATCGGGGACAGCCAAAGTGCGAGCCAGGCCCACAGTCAAACACTACTCCACTTTCCACACCCCATCCTCTGATATTGTGCAAGGCTTTGCAGTCCCAACTCCTCAAGTGCCACCTGTTGTGAACGGGCCGGGGATCACAGCAAGAGAAAACGGAGAGAAGTCTGCCAGATACATGAACGGACTGATGGAGGAGAACATCTACATCCCTCCCCCTCCGGCAATGAAACCCCCGCCTCCCCCGCAGCAGTTTGTGCCCATTCCTCCTCCCACCAAGTTTGCTGGGGACTCTGTGCCCATCTCACCCACCTCCCCAAATGTGGCCTTCTTGAAGCCGCCGCCCATGTCTACTCCGAAGCCACCCGGTCAGCCCGTAGTGAAGGAACCAGACCTTTATGCTCTCAAGCCACCGCCGATGGCTCCGCCTAAGCCTCCCACTAACACCAAACAGCCACCCCCATCTCCACAGGTTGATCCAAACTTGAGCGATGACTTCACCATCCAGCGTCCAAGATATGCTCCTCCCATGCCCCCCATGGTGCCCCAAAAAGACACCATTCCACAGCCCCCACCATCCCGTGCGCCGGGCCCACCTGTGCTACCCAAAACCCCCAAAATGCCCCCTCCCAAACCCCACCGGGATTCCTCCATGCCGAATCGAGACGTGGCGCTGCAGCCGCCCATCCTAGACCAGCAGGGTTCCACCCCCTCCAGCTTCAATCCCCAGAACACGGCCAAGATCTACAGCACGGGCAAGACGGCCCCGGCAGATGGACagtcggagagagagaggaaggccAAGTCCTTAATTTTCCTGCAGGATCCAAACAGGAATGTGCTGCCCATCCAGGTGAATGGGAAAGCCACTACCAACGACCAGGATCTAAGTTCCAGTATCCCAGTGAAATCCCTAACACCGCCGGTCAAACCTGCTCGGAGGAACAGCTCCGGCCTCCAGCTGGAGAAGGATCTGCAGCCATTTAAGGACAAAATTCCATCCTACACCCCTATCTCCATCTCCAGGACACCACCCAAGCCTGGGGCAGGGACCCATGAGGTAGATGCCACAATACCGGCGGCTTCAGCAAAAGTGAGCCCACCTACGGACACTTCCAATCTTTCCTCTCGGCCCGCGGCACTGGCAATATCCCTGCCAAAGCCTGAGGACGTCCCCAAACCGTCGCTGGCAGTGTCTCCGCAAGAGATCCCCCAgccctcactctctccctgcGGCCAGGAACTGAACTGGAGCAGACCACCACCGATCTCGCCGATCAGGCACCAAAAGCACAACATCAGTAGGACGCCCTACCCTCTCCGTGCCACCGATGTCCTTTCTGCCTCGGGACCCTCTCAAAAAGACCGGTCTAAGTCCCCACTGGATCTACTGAATGCTGCCAAACAGAGGAGCCAAAACAGACCCACCCTGACCAGccagagcaacaacaacagcagcagcagccccttACCCAGTGCATCTCTTGGGTCAAGCATTCACCCCAGTGAGTCAAATCCCAACTCCTTCACGGTGACCCCCAGGAGTCCCGGGAGCCTTGAAAGTGCTGGATCCATCTACTCTATACCAACGCACAAGGCGCCAAACTCACTGAACTCCCCAAACTTCTCCAGCAGCACCCTAGTGTCAGAGCACCTGAATAAACTCAGGACTGACTCAGTCTCGAGCACATCGTCCCCAGTGTCCGTCAGGGATGCAGAAAGCGGGGAAGACACATTCTTTATCCCACCCCCTCCTGAATTCGCCAACTCGGACATGGAAGAGGAGAGCTCCCCAGTCCAGAGAGACCCACCTCCCAGTTGGCTTTCCTCCACCACAGTCCATCAAAATAACAACCCACCTCCCAGTACAGAGGTCAAAGCTCCTGCCAGCTTGGTCAATAAAAGCAAGGCTCCCCTGCCTCCCCCAAAACCCCAAGGTAAGGCCCCGGTTCCTTCTCCACCCCGATTCCCACCCCCAAAGTCCCCGACACAAGCCAAACCAAAACCCCCAGCCCAGGCCTCGGTCAAGCCTGACACACCAGCTCCCGCTGGCCTCCTGGCCCCCTCATCAGCTCTCACGCCCAGTCAGATGACCCTCCAGAGCATCTTGCAGAAGAAGATGCTGGAGATGGAGCAGAAGCACGTGTTCCAGCAGGCCGAGGCCAGCAGCGACGAGTGGGGGACCTCCTACTCCGAGGACGAGAGCAGCGGGCCGGCGAAGCCCAGTTTTGTTCGGAAGGACCGGAGTCCCACTTCCAGAGCACCGCCTGCCCAACTGCAGGACCAGTTCCTCAATGAACTTGGAACCAAATTGGGGAAGAAACCTACGGTTCCCACAGCCACGACAAAGACCGCTACCAGCAGTGAGCCACAGACCTCCAAGTCTAAGCAGCCCTACGGAATGACCTTTACGGTGCGACCCGGAACCAAACAGCCCATTACCCTGGTGAGCAAAGGAGAGCCCATGTGAGACGGACACTCCGGAGCGGTCTGGAACACGCAAGACTTTTAATGGCTTCCAGGAGCTGGGCTGCGCTGCTCCACCTTGAAACTAGGGGAGGAAGGACCTGTctagagagatggggggggggggcttctgGTAAAGAGATTAACTAAAAGCACTTAGCTTGCCTTGTcaagttgtttaaaatgtatatactccAGTTGTTGGAGTGAGACTGtaataagtaaatgaataattatatatatcaagCATATGCCATTTAGGAAGATGAGAAAAGGTAGCTTTCTGACGATATATTGGTATGGGGACAATGTTACCAACCCTTCAGTGGAGAATGTTCTCTGCATCGAAAAATGTGCTCCTGGTTACGTTGACAAGCCTTAAAACAGCGACTCTCggctgtaaaatgttttcagtgttaCACCAAATCACTGCTCTCCTTCTGCTGCAGGAGCCGTTTGTATTCACAatctttgtcatttgttttaaacagtgcaCAGGTTagagttctctctctctctctctctctctctctctcaggtggggCAAAATACTGCCCAGGtccttaaaagaaaacaaaaaacatatacagctgtggaaaaaattaagagaccacttaacattgatttctgaacttggggtgatctcatttttttccagagctgtatattatacTCCAGCCTGTACAGTAAATATCTAAGTATCTGCTTTTTATATTCGTGATCTATAACCCTGAATCTATTTAGGTTGTTTTGTAGCTCTTAGTTATAAGTGGCTATGGTACCCAGAAGGCAGTTTGAAAGAAACAAGgatacaaaataacacacaaaagtGATACAAGACTTGCATTACCTGGGATATGAAGACGTCGGCCTTAACATTTTGTTCTGGGTCTAGTGGCCATTCCTTGTGATAGTAACATGGATGAAGCTGAGATTTGTACTTTTCATAATCTGACCCGTCTCAGGGGAGGGTGACAGCAGCCAGATATTGAAAGAGAGacgttcttgttttgtttatttaaaagacTTTGTTAtcgttttattatttgaatgtctatttttttcatgtcgcgtttttcattttcttgtctGCCACCCCCCGGTACCCTTGACATAGACTGGGGGTCCAGAATTCATTGGCCGGGAGCTGGGAAATGTgagatttgaaattaatttggctTCAAAATCTCAGGACAAGTAATGCCACCCGTGAGCAAAGAGGCGTCCTCTCTGGTCCCAGCCAGTTTATGACCACGACGCTCCCCAGGTGCCGCGACGGACGGCAGTAGGGCTGTGTTGGAGGGACAGGAATGATTACTTACCCCGGCACATTACTGACACTCTTTCATCAGAGAGGAGCCACTGTCACAATAGGTATCGAGTCccacaattacaaatataaaaatggccGACACTAGTATCGCCACAATTCAGAGCGGTGTTGCGGAAATCACAATCCTTTTGTACTGAACACCGATGGCCAAGACACAGTACTGAACACTGCTGTACCACTGGAAAAGGGACTTGAGTTACACTGTGTCCAGCCTGTCTTTGTGAGAGGGGAAAAGAAGATCTGTATATAGAAGAATGCTAATTAAGTACATCAATGGCCAAATTACTGTATTAGGATCCAAAATGTTGCAGGACTAGTACCATGCAGCTGTAGAAGAGGACCTTACGCTACTctgtgcctttttgttttgtgaatgtgaGGGGGGGGGATCTGTACATACAGAATAAAGTGtataaactttatattttatttaacatgcagaggaatccaaatgtatttaagaatAAAAGGTCACATGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013862 True 4544 mRNA 0.51 5 45682080 45695028

Neighbor

gene id symbol gene type direction distance location
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding upstream 25708 45653353 ~ 45656372 (+)
AMCG00013855 NA coding upstream 45511 45635112 ~ 45636569 (+)
AMCG00013853 NA coding upstream 48604 45628387 ~ 45633476 (+)
AMCG00013854 gstm3,LOC106946564,LOC103151067,LOC106525860,LOC105931784,LOC103467185 coding upstream 79888 45598723 ~ 45602192 (+)
AMCG00013850 cpne5b,LOC107714485,LOC105027122,LOC108280970,LOC108436414 coding upstream 112764 45551973 ~ 45569316 (+)
AMCG00013863 NA coding downstream 25192 45720220 ~ 45740542 (+)
AMCG00013873 NA coding downstream 98507 45793535 ~ 45798941 (+)
AMCG00013869 NA coding downstream 105890 45800918 ~ 45802811 (+)
AMCG00013871 LOC103358259 coding downstream 138793 45833821 ~ 45846136 (+)
AMCG00013870 NA coding downstream 160424 45855452 ~ 45876895 (+)
G47264 irf6 non-coding upstream 40443 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 57509 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 59274 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 61848 45616133 ~ 45620232 (+)
G47232 NA non-coding upstream 107767 45569409 ~ 45574313 (+)
G47320 NA non-coding downstream 86998 45782026 ~ 45800423 (+)
G47336 NA non-coding downstream 131284 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 156067 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 206839 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 211074 45906102 ~ 45906399 (+)
G47206 NA other upstream 321198 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 586411 45034772 ~ 45095669 (+)
G46945 NA other upstream 2241382 43438492 ~ 43440698 (+)
G46862 NA other upstream 2592437 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2637644 43039984 ~ 43044436 (+)
AMCG00013872 NA other downstream 121344 45816372 ~ 45823228 (+)
G47398 NA other downstream 239631 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 248543 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1342067 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1524891 47219919 ~ 47227969 (+)

Expression


Co-expression Network