AMCG00013872


Basic Information

Item Value
gene id AMCG00013872
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45816372 ~ 45823228 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013872
ATTACTAAGACTGAGAGAGTTGCGCTCTTCTTCTGCCATGATGGACAACCGAGATTACCTGTTCAAAGTGCTGGTCATCGtgGATTTTGCTCTAAAAGTTGTGCAGCATTCGGACACCGAGACCGTGAGGCTGCAGCTCTGGGACATCGCAGGTCAGGAGCGCTTCACCTCTATGACCCGGCTGTACTACAGAGAAGCTGCCGGATGCATCATCATGTTCGATGTCACAAACGCCTCCACCTTTCACAACTGCCTGAACTGGAAACAGGATCTGGATAGCAAGGCCATGCTCTTGGATGGCAGCCCTGTGCCCTGCATCCTGCTGGCCAACAAAGTGAGACCAGGGTTTGCACTCTTATTGGGATCTGTTCTGATGACGAAGATGATGACCCAGCCAGGTTTGAGGAGGGAGAGCCAGGGAGGACGCATCCAGCTGGACTCGATGCCACAGGGTGTGCTGGTGAAGAAGATGATGACGACCCAGCCAGGTTTGAGGAGGGAGAACCAGGGAGGACGCATCCAGCAGGACTCGGTGCCACAGGAGTCCTTTGAGAAGGGATGCTGC
>TU59011
CAACAAGTTTCAGAGTCGGAGtgacaacaaaataagaaaaacgaCACAGAAAGTCGCTGACACCGAGAGAGGAGATATGCAATGGTGTTTTACAACGCTCATTTAAACAGGATCATTTTTAACAGCCGGGACAATAACGCGTGGCATATCTTTTAATGCATCTCTAGAATtggatttatttcctttttctgtgtAACTGGGGGCTGGGTCTTATGTAGACGCTGTGGGAATCAGGTTGGAAATTGATCAGGCACACATATCCCTTTTCAATATGTCGGAAGATTACTAAGACTGAGAGAGTTGCGCTCTTCTTCTGCCATGATGGACAACCGAGATTACCTGTTCAAAGTGCTGGTCATCGGTGACGTTTTGGTGGGCAAGACGTCCTTCGTGCAACGATACGTCAACGACAGATTCAGCAAACACTACAAATCGACAATGGGAGtgGATTTTGCTCTAAAAGTTGTGCAGCATTCGGACACCGAGACCGTGAGGCTGCAGCTCTGGGACATCGCAGGTCAGGAGCGCTTCACCTCTATGACCCGGCTGTACTACAGAGAAGCTGCCGGATGCATCATCATGTTCGATGTCACAAACGCCTCCACCTTTCACAACTGCCTGAACTGGAAACAGGATCTGGATAGCAAGGCCATGCTCTTGGATGGCAGCCCTGTGCCCTGCATCCTGCTGGCCAACAAAtgtgaccTCTCTCCCTGGGCGATGACTCAAGNNNNN
>TU59012
GCTGCCTGTCTTCACACCCAGCCTCACTgcgtttctctgtctctctgtggcgCCACAGTGTTCTGATGACGAAGATGATGACCCAGCCAGGTTTGAGGAGGGAGAGCCAGGGAGGACGCATCCAGCTGGACTCGATGCCACAGGGGTCCTATAAGAATGGATGCTGCTGAACTGGACCGACTCCCGAGGCACAGACCGAGGCCTGCACGTGAAGCCACATTAAGAAACAATCGCACTTCTTTATCGTACACGGCTGATAGCGACCCTCGTGTGAAGCCAAGGCTGTGCCTTTGAGCGGATCCACATTTGGCACAGCTGGATGAGGCTCTTGGGTTAGTGGGCCAGGATGTGGATGTACAAATGTGCCACGCAGAGAGAAAATCGGTCTCCTCTTGATATCGATGTGTTGTATATTCTGTCATTCTGTAGAAACCTGTTTCAAAGTGtaacttgttttaaagtgaGTGTTAAGCTGTTGACTCTGATCGTTCCTCTTTGCGATGTGGACTGATGTCTCAGAGGTGAGGCTGGGCATCCTGCTGGAGGGAAGACAGGGAAtggtgtaggtgtgtgtgtttgacaaccagtttgtaatgtaatgatgtGCTATTGATCAGTGCCAGGAGTGCGGCAGGATATCGGCCTCCTCAGAGCACCCAGAGGAGCAGAGCAGAGCTCGGCCAGTCTAACAATAACTCGCGGCAGAGGCTCTGCTCTTGAATTGTCTGCAAATCAGAAACACATTGAGAGTTGTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013872 False 565 mRNA 0.54 5 45816653 45821139
TU59011 False 735 TUCP 0.48 4 45816372 45817955
TU59012 True 759 lncRNA 0.51 2 45818951 45823228

Neighbor

gene id symbol gene type direction distance location
AMCG00013869 NA coding upstream 13561 45800918 ~ 45802811 (+)
AMCG00013873 NA coding upstream 17431 45793535 ~ 45798941 (+)
AMCG00013863 NA coding upstream 75830 45720220 ~ 45740542 (+)
AMCG00013862 NA coding upstream 121344 45682080 ~ 45695028 (+)
AMCG00013852 guca1b,LOC107562461,LOC107657012 coding upstream 160000 45653353 ~ 45656372 (+)
AMCG00013871 LOC103358259 coding downstream 10593 45833821 ~ 45846136 (+)
AMCG00013870 NA coding downstream 32224 45855452 ~ 45876895 (+)
AMCG00013868 NA coding downstream 54870 45878098 ~ 45885313 (+)
AMCG00013878 NA coding downstream 66067 45889295 ~ 45893895 (+)
AMCG00013881 NA coding downstream 71919 45895147 ~ 45901581 (+)
G47320 NA non-coding upstream 15949 45782026 ~ 45800423 (+)
G47264 irf6 non-coding upstream 174735 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 191801 45624372 ~ 45624571 (+)
G47258 NA non-coding upstream 193566 45622587 ~ 45622806 (+)
G47255 atp5f1,LOC107679218,LOC107731279,LOC107711984 non-coding upstream 196140 45616133 ~ 45620232 (+)
G47336 NA non-coding downstream 3084 45826312 ~ 45826652 (+)
G47322 NA non-coding downstream 27867 45851095 ~ 45854769 (+)
G47383 NA non-coding downstream 78639 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 82874 45906102 ~ 45906399 (+)
G47390 NA non-coding downstream 97912 45921140 ~ 45921898 (+)
G47206 NA other upstream 455490 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 720703 45034772 ~ 45095669 (+)
G46945 NA other upstream 2375674 43438492 ~ 43440698 (+)
G46862 NA other upstream 2726729 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 2771936 43039984 ~ 43044436 (+)
G47398 NA other downstream 111431 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 120343 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1213867 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1396691 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1928986 47752214 ~ 47819723 (+)

Expression


Co-expression Network