AMCG00013874 (rbbp5,LOC106583489)


Basic Information

Item Value
gene id AMCG00013874
gene name rbbp5,LOC106583489
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45807005 ~ 45816694 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013874
ATCATGGCAGAAGAAGAGCGCAACTCTCTCAGTCTTAAGATAGCTGCAATTCCTGAGCTTTTTCTATGTTTATTCGATTTCCCTCTTTACAATGAGGCATCGGAAACATCCTCTCCTCGCCCGGGGGTCCTTCATCGTAGCAAGGCGCCAGTCgctggtgtttattttttgatggCTGAAGGATAATAAAAGAATAAACGGCTcggttattatttattgtttctatttatttgagCGCTGAACGTCACCAGTGGTTGGTCTCCGGCAGCTGAAGATGAACCTAGAACTGCTTGAGTCCTTCGGGCAGAATTACCCAGAGGAGGCCGATGGCACCCTGGACTGCATCAGCATGGCGCTTACTTGCACCTTCAACCGTTGGGGCACCCTGCTGGCGGTGGGCTGCAACGACGGGAGGATTGTCATCTGGGACTTCCTCACCCGGGGTATCGCCAAAATCATCAGCGCTCACATCCACCCCGTGTGCTCGCTGTGCTGGAGTCGAGATGGACACAAGCTGGTCAGCGCGTCCACGGACAACATTGTCTCCCTGTGGGACGTCCTGACCGGGGACTGTGACCAACGCTTCCGGTTCCCCTCCCCCATCCTCAAAGTGCAGTTCCATCCCCGGGACCAGAACAAAGTGCTGGTGTGCCCAATGAAGTCGGCGCCGGTCCTGCTCACCCTGTCCGACTCCAAACACGTCGTGCTGCCCGTGGATGACGACTCGGACCTCAACGTGGTGGCAGCTTTCGATCGGCGCGGCGAATACATCTACACCGGCAACGCCAAGGGGAAGATCCTGGTGTTGAAGACGGACACGCAGGACTTGGTGGCTTCGTTTCGAGTGACCACAGGAACCAGCAACACCACTGCCATCAAATCCATAGAGTTCGCACGGAAGGGCAGCTGTTTCCTGATCAACACGGCAGACCGCATCATCCGCGTGTACGACGGCCGGGAGATCCTGACATGTGGCCGGGACGGCGAGCCGGAGCCCATGCAGAAACTGCAGGACCTGGTGAACAGGACGCCCTGGAAGAAGTGCTGCTTCTCCGGGGACGGGGAGTACATCGTGGCCGGGTCCGCCCGCCAGCACGCCCTCTACATCTGGGAGAAGAGCATCGGCAACCTGGTGAAGATCCTGCACGGCACGCGCGGGGAGCTTCTGCTGGACGTGGCGTGGCACCCGGTGCGGCCCATCATCGCCTCCATCTCCAGCGGCGTGGTGTCCATCTGGGCGCAGAATCAGGTGGAAAACTGGAGCGCCTTCGCCCCCGACTTCAAAGAGCTGGATGAGAACGTGGAATATGAGGAGAGGGAGTCGGAGTTCGACATCGAGGACGAGGACAAGAGCGAGCCGGAACAGACAGGTGCTGATGCCGCGGAGGACGAGGAGGTAGACGTCACCTCGGTTGACCCCATCGTGGCGTTCTGCAGCAGCGACGAGGAGCTGGAGGACTACAAGGCCCTGCTGTACCTCCCCATCGCCCCCGAGGTGGAGGACCCTGAGGAGAACCCCTTCGGCCCCCCGCCGGACGCGGCTGGCCAGACGATCGCCTCTGAGGAGCCCTCCACCGGCATGGGGGGCGGCAACGACAAGAAGCAGCGGCAGCCCTCCGCCGAGGGGGCTCCCCCCAAGAAGAAGGCCCGGACCACCAACATTGAGCTGCACGGCGTCCCAAGCGACGaagTGCATCCGTTGCTGGGCGTGAAGGGAGACGGCAAGTCTAAGAAGAAGACGGCGGGTCGGCCGAAGGGATCGAAAGGTAAAGAGAAAGATTCTCCCTTTAAAGCCAAAATCTACAAGGGGGACAGAGGGTTACCTTTGGAAGGAGGAGTGAAGGGCAAAGTGCAGGCAGATATTGGACAGCCCAAGACAGGCAACCTGGTGCAGTCCCAGTACAAGCAGCACGAAGCGCAGGGATTGGACTGAACCACTGGGCACCGCAAGAGAGCCCCGGGCTGGAGGGGCGGATGGACTCGGCGTCACACAGACTCCTCTCCTGCGCGGGCCGGAGTCGTTCCCGGCTCCAGACTctccagtttttaatttttgccTCCCCCACCCCGCCCCTCTAAGACTGGATAAGAACGGCCTGTTTCCGATTGGCGGCCCCCGAGACACAAACGGTGGTTTACTGTGTGTTCTGAACCCGGTGTTCCCGGGTCAAGGGGGTCATCGGCCTGTCGACGGAGACGCTGGCGATGCATTTTTAACCCGCGGTCGGAGCGCTGCGTGCCGTCGCAGTGTTGGGGGGATTTTCAGATCATGATTTGCAAAGAtgaaccttttttctttcctctgtctttttttcttgtacctCATGATTCTAACCTGATCGGCCTGAACTGAAAGTGGAAGTGATCAGGGCGATGGACTGTTCAGATGCAACAACTCTGACTGGTTTCAGACAAGGTGGAGGATATTTGATggtcttcaaaaacaaacattgtacgATATTGTAAGACCATGAGGTCCAAATATAACTCTTTTTATCATTTTGGACATTTTACTTCCATTTTGGAGtgtttctttctatattttttttatagaaacagTTGCTGTGTACTTTGTATGTTGTCTGTATGTAAATACCTGATTTCTTTTCGGAGTAaacctttcatttgttttacggATGTATTGGTTTCATCATGAACTTCCAGCACTGGCagattttcaaatgcaaataaaaacaataaataaagagtaGGAACACAGtgatgcgcacacacacacagacaaggtgCATCTGGCACGGGGGCCGTGGAGCACACGGGTACTACACTGAAGTCAACATGCCTAAACCATTGCTTTTACACCTGACCCCACTAGATGGCGGCATTACATCAAATCTTACCTTTAATCTTAATGGCCAGAGAGACAGTTCAGAAC

Function

symbol description
rbbp5 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

NR:

description
PREDICTED: retinoblastoma-binding protein 5-like isoform X1

GO: NA

KEGG:

id description
K14961 RBBP5, SWD1, CPS50; COMPASS component SWD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013874 True 2893 mRNA 0.55 15 45807005 45816694

Neighbor

gene id symbol gene type direction distance location
AMCG00013875 NA coding downstream 672 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 22181 45783866 ~ 45784824 (-)
AMCG00013866 NA coding downstream 54417 45743779 ~ 45752588 (-)
AMCG00013867 NA coding downstream 94426 45712091 ~ 45712579 (-)
AMCG00013864 NA coding downstream 104232 45695635 ~ 45702773 (-)
AMCG00013877 NA coding upstream 6423 45823117 ~ 45831441 (-)
AMCG00013876 LOC105900578,LOC105920322 coding upstream 40772 45857466 ~ 45859867 (-)
AMCG00013887 cept1,LOC105013905 coding upstream 162412 45979106 ~ 45991807 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 192410 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 211721 46028415 ~ 46038881 (-)
G47259 NA non-coding downstream 184250 45622515 ~ 45622755 (-)
G47185 NA non-coding downstream 538609 45268054 ~ 45268396 (-)
G47180 NA non-coding downstream 702118 45104223 ~ 45104887 (-)
G47168 NA non-coding downstream 840077 44966010 ~ 44966928 (-)
G47162 NA non-coding downstream 843525 44961849 ~ 44963480 (-)
G47358 NA non-coding upstream 9029 45825723 ~ 45826654 (-)
G47359 NA non-coding upstream 11271 45827965 ~ 45828251 (-)
G47365 NA non-coding upstream 29155 45845849 ~ 45854800 (-)
G47391 NA non-coding upstream 104412 45921106 ~ 45922914 (-)
G47538 NA non-coding upstream 414631 46231325 ~ 46238514 (-)
G47261 NA other downstream 183110 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 462990 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2192426 43609282 ~ 43614579 (-)
G46742 NA other downstream 3105937 42699506 ~ 42701068 (-)
AMCG00013773 NA other downstream 3351247 42428777 ~ 42455758 (-)
AMCG00013882 cry4,LOC108413014 other upstream 102942 45919636 ~ 45928309 (-)
AMCG00013883 NA other upstream 145496 45962190 ~ 45974311 (-)
AMCG00013890 cacna1s other upstream 258735 46075429 ~ 46083542 (-)
G47501 NA other upstream 343845 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 482467 46299161 ~ 46311118 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020677 rbbp5 coding NC_007133.7 CM002906.2 770001 ~ 784110 (-)
grasscarp (Ctenopharyngodon idella) CI01000186_00272056_00278805 RBBP5 coding CI01000186 null 271668 ~ 279177 (+)