AMCG00013878


Basic Information

Item Value
gene id AMCG00013878
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45889295 ~ 45893895 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013878
CGGCGCTGTTAGACTGCCGAATGGGGGATTTCACGTGTGCAAGcgcagaataaaacaaatctccacTTCTGTGTCAAACATGTGGCGATTCACGTTTATAATGCAGTTGATTTGAAAACAAGACCTGTTTCTAACGAGTGTAGCACCAGCCTGCGTGTTTTAATAAGAAAACATGAGCAGAAGCAGGGGATATCCAGTTGGCTTCAGGAACCTGAGGGACCTCCCTGAAACCCGTTAAAGTTGTGGTGAAGCCACCCGCACGTCACTGTACAGTCCACCGCCTGACTTCTGGGACCAGCGGGCAGAGGACACCACCACTCAGGATGTGTTCCCATAAGGCAGGCAGACTCCCGGGCTGTAGCGCTTCCACAGACCCTCCCGGCACTTCGATCAACATAGGCGGGAAAAACGTGTCCGTCCGCGAAATGGAGATTCAGATCCCAGCCGGGGCGGATGTGAGAACCGTTTCTGTCAAATTTCTCCCTCCTTCGTTCCTGAGTAAAATGGGCCTCCCCTGGCCTGCGAAGCTGAGGGAAGTGGACGTCTCGGACCAGTTGTTGGCGTTCTGCATTTCTCCGGTCTACACCCTGGAAGCAAAAGACAGTGCCTTTTCCCCGGGAGTTGCCTCTACCGGATCCAAGTGTGCAAATTCAGACCCGGGTGgcggtggtgggggtgggggcgaGAGCATTGAACTGAACAAATGCTGGCTTCCTATCAAGTCCTCCAGCTTCGCGGCTTTCAAAGTCCTGCAGAAGTTCATGGAGAGCCCCCAGTCTGCGACCGTGAGCGTACTCAAGGAAGTCCTGAAGAGGTGCGGCGTGGCTTCCACTCCCCAGGAAGACACTTTCCATGTCGGGCAGGACACTCTCATCCTCTACAGCGGCAGGGTCTACCTGTTCATCAATGAGGTGAGAGCGGGAGGGAAGAAGCTGGGCCCGAGAAGCCAAGAGCAGGGCTGGCGCTCCCCCTGTCCCCCTGTGGCGCAGCCTGTGGCCCAATGGGAGAAAAGGGCCTCACCTTCCCAGACCTGCCAGACCCAGCCAGTCTCCAAACAGGCCTCTACAGCCGACTCTCCCCGGTCCGAGCAGGTCCGGTCTGCTGTCCCTAGCCTCGATGTCAGGGCACAACGGCACAAATTTGGAATTACCCGGAAACTGAGTGTCAATCTGATGAGGCTCTCCGTCGAAGCCTGCCGGGAGTCATCGAAGAGACCGCACAATGCCACGGAGACGCAGGCCGCCGCGGACACACCTTGCTCGGAGGAAACTCGGACCCGCGGTGAAAAGAGCAGAGACATCCTCCCAGAATCCTCCCCCGCTGGGCAGAAGAACCGCGATGGGGAGCGACCTGCATCGGGCGGAGATGCTTTTGAACTGGTGGCAACTGAAGAGGCCACTGACGAACCCGCAGCTAAGAAATCAAAAGTGGACTCGGCCAGTGGCCCGTCTGACTCTCCGGACGCCGAGCCCCAGATCGAGGAGAGCCAATCTTCAGAGGAGGGAGGATGCGGGTCTCAGGGCAGCGGAGAGGAGCCCCTCTTCCTGGCGGACCACGCAGGGTTTGATTTTGACCTGTCCTTACGGGAAGAGAAGATTGGCCGGATTAAAGCTCTCCTCAGGGAGAAAGAGGCGGAGCTGACCAAATTCAGGCAGTCAGCTGGCCAGTGAAGGTCCGGCCCCCTGCGGCCGGTATAGAAAACACCTGACAAAGTAAACGAAGCAGTTCTTTCTTTGTTGTACAAGTTTGTCTTTGTAACCTTGCAGGAAGTGTATCGTTAATGGAAAGTACATGTTGGTACCAAGTTCTTTAACCCCTTGCGTGACACGTTGTCAATACGGATTACCTTAATGAGGTACAAAAGCCCTCTGAATGCTTTCTGTAAAGTTTAGTAAGTGTTGTGATTCAGTGGTGGGATTGTTCATGAATTCGGtcattgtttgatttattttctgttacaatACGCACAACACTGTGAGCTTGAATGTTGCGGAGTTctgtttttaagtgtattaaGTTATTTCCAAgtcttatttttcaataaacttGTTCTGTAGCATCGCACAGACAATGCCTACTGTCAGAGTATATGTTTTTCGTATTGCTCTACCAACAATATTGATCTGTATACCGTGGAACGTTTCATCCACCAAAGACAGCACACGCTTCTAGGGGGATAGAAAGATGATAAGGAGGAAGAGTGAAGGGGAACTTCATGTAACACGCAGTTCTGCAAAGCGAGGCTTTTTGTTTCTGGACTGCAACAGAGGCCTGTCTGTGCAAGTGTCGGAGATGGCAGCTCAAAGTGTCTCCTGGTTGTCTTCGGAGCGTCGCCGACTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013878 True 2340 mRNA 0.53 4 45889295 45893895

Neighbor

gene id symbol gene type direction distance location
AMCG00013868 NA coding upstream 3982 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 12400 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 43159 45833821 ~ 45846136 (+)
AMCG00013869 NA coding upstream 86484 45800918 ~ 45802811 (+)
AMCG00013873 NA coding upstream 90354 45793535 ~ 45798941 (+)
AMCG00013881 NA coding downstream 1252 45895147 ~ 45901581 (+)
AMCG00013880 NA coding downstream 82333 45976228 ~ 45978644 (+)
AMCG00013884 NA coding downstream 99318 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 143498 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 210093 46103988 ~ 46123681 (+)
G47322 NA non-coding upstream 34526 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 62643 45826312 ~ 45826652 (+)
G47320 NA non-coding upstream 88872 45782026 ~ 45800423 (+)
G47264 irf6 non-coding upstream 247658 45639864 ~ 45641637 (+)
G47262 NA non-coding upstream 264724 45624372 ~ 45624571 (+)
G47383 NA non-coding downstream 7972 45901867 ~ 45903185 (+)
G47387 NA non-coding downstream 12207 45906102 ~ 45906399 (+)
G47390 NA non-coding downstream 27245 45921140 ~ 45921898 (+)
G47546 NA non-coding downstream 402738 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 525237 46419132 ~ 46470471 (+)
AMCG00013872 NA other upstream 66067 45816372 ~ 45823228 (+)
G47206 NA other upstream 528413 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 793626 45034772 ~ 45095669 (+)
G46945 NA other upstream 2448597 43438492 ~ 43440698 (+)
G46862 NA other upstream 2799652 43087289 ~ 43089643 (+)
G47398 NA other downstream 40764 45934659 ~ 45941906 (+)
AMCG00013879 dennd2d other downstream 49676 45943571 ~ 45959194 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1143200 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1326024 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1858319 47752214 ~ 47819723 (+)

Expression


Co-expression Network