AMCG00013879 (dennd2d)


Basic Information

Item Value
gene id AMCG00013879
gene name dennd2d
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45943571 ~ 45959194 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013879
ATGAGCGCGCAGCGGGGAAAGGGGCGCGCAGGACGGATCGGCTTCGGGCGAGAGGCGCACAAGCCGGCCAAGGAGACGGTGCCGGagatgggggcggggggggccaTAGCAGACACGCAGCCCCGGGAGCAGCGCTACGCCAGCGGGCAGTTCTTCTTCGAGTACCTGGTGGTTGTCAAGccgaagaagaagaataaagaGGAAGGCTACGAGCCCGAGATCATCTACCAGTTTCCAAAGCGAGACGGCATGGTGAAATAccagaaggaggaagaggagaagacaCTGAAGGCCATCACGCTGTTCTGCTTCCCCGATGGAATCAACTGGGCACCCCTCACCGAATACAGGAGTGAGACGTTCTCGTTCGTCCTGACCGAAGTTGATGGGAGTCGTAGGAACGGATACTGCCGCAGGTTACTGCCCCATGGGAAGGGAGCTCGACCTCCGGAGGCCTATTGCATCATCAGCAAGCTGGCCTGCTTTGGACTCTTCTCAAAGGTGGAGAAGCGACGACAGATCTCTTCAGCGATGATCTACCCATTCATGCAGAGCCTGAGGGAAGCAGCCTTCCCTGCACCCGGCAACACGGTCAAAGTGAAGAGCTTCATCCCCGACTCTGGCACGGAGATCATTGAGCTGACGCGCCCGCTGGACTCCTGGCTGGAGCACGTGGACTTCGGCACGCTGTTCCGCTGCCTGAAGGACGAGGAAGTTCTCCAGGTGTTCGCCTCTGCTGTGATGGAGAGGAGGATTATCTTCATCGCCGAGGAGCTCGGCACTCTCTCTCAGTGTATCCACGCGGTGGCCGCCCTGCTCTACCCCTTCACCTGGCAGCACACCTTCATCTCCATTGTTCCCGAGATCCTGATTGACGTGGTCATGGCGCCCACGCCCTATTTATTAGGGGTGCAGAAACGCCTGCTGGAACACTTGATTGACCAGGGCGACTTGCTCGTGGATTTATCTGAAGGAGCCGAGCAGAAGTTCATCAGCAAGATCGGTGATGAAAAAACAATCTTGCCATCAAAACTTCAAGATGAGATCCTGCAGGCGCTAAGTGCCAGGAAAGAGAATTCAACGCTGGAGGAGCTCAACAAGGTGGTGTCGGAAGCCTTCCTGCCGTTCTTCGTGAAGACCGTGGGCCACTTCGCCTCCCACATCAAGAGGAGCAGCAGCGACCAGAAGGGCATTGCAGAATAccaggagaagaagaaagaaaaggcgAAGAAACACTAG
>TU59104
agagagagagagggagcgcgGCGCTGTGGGATGAGCTCCCAGTCTGAGACTTGTGCCGCTGGGATCGGTGTCCTTTACCGCGTGTAGGATTATGGTGTCGATTTTGCACAGCAGCGCGGGACACGGCGTGCCTTTGTAGCCATGAGCGCGCAGCGGGGAAAGGGGCGCGCAGGACGGATCGGCTTCGGGCGAGAGGCGCACAATGACAAATCGCATGGTGAGGCTCCACAGCACACCACCAATGGCAAAGGGAATGGCCCTGCAGCCTCCAAGCTGAGTGAGTGTCAGGGGGGTGTCAGTCCTTT

Function

symbol description
dennd2d Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: DENN domain-containing protein 2D isoform X2

GO: NA

KEGG:

id description
K20161 DENND2; DENN domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013879 True 1239 mRNA 0.57 12 45943712 45959194
TU59104 False 305 lncRNA 0.61 2 45943571 45947856

Neighbor

gene id symbol gene type direction distance location
AMCG00013881 NA coding upstream 41990 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 49676 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 58258 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 66676 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 97435 45833821 ~ 45846136 (+)
AMCG00013880 NA coding downstream 17034 45976228 ~ 45978644 (+)
AMCG00013884 NA coding downstream 34019 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 78199 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 144794 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 174432 46133626 ~ 46144604 (+)
G47390 NA non-coding upstream 21673 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 37172 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 40386 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 88802 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 116919 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 337439 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 459938 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 971273 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 1010544 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 1016322 46975516 ~ 46976186 (+)
G47398 NA other upstream 1665 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 120343 45816372 ~ 45823228 (+)
G47206 NA other upstream 582689 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 847902 45034772 ~ 45095669 (+)
G46945 NA other upstream 2502873 43438492 ~ 43440698 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1077901 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1260725 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1793020 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2280506 48239700 ~ 48258433 (+)
G48018 NA other downstream 2309560 48268754 ~ 48269272 (+)

Expression


Co-expression Network