AMCG00013880


Basic Information

Item Value
gene id AMCG00013880
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45976228 ~ 45978644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013880
ATGGCGGCACGTAAATCCTCcgataaaaagaaaaacgtgCCCAGCAGAGCTCGCCAGGACAAGGCGGGCTTCGGCCTGACGGAGCGCCAGATCGCCGCCTACAGCTTCGAGGAGGAGGATCCGCAAGAAGAGGAAGCCCCCCTCAAAGGGCGAAAAAGAGCGGCTGTGGCGGAGGCAGAGCCCGCAGACACTCCCATTAATGGGAAACGCCTGGAAGGATACACCAAATCTTCTGTGAAATCAAGTAACCTAAAAATTGAGCAGATCTGGAAATCACAGCAGAATGAGAGGAATAAACTGAACGAGGACTACAGAAAGCAGTTCTCAACTGTCTTTAATCAGTGGGAAGGCGATGTCCAGAAGACTAAGGATCAGGAGGAAAAACTTGCGAACCTGTTCCGGCagcagcagaaattgtttcaGCAAATGAGAGCCGCTCAAGGACAGAGACTGAAGACCATCAGGCAGCTCATGGAGCAGTTCATGAAGAGCTTGGAAGAGCTGGAGAACAGCCACTCGGCCGAGCACAGTACCGTCCAGAACGAGCTTCGCAAGGAAATGGCCATCTTCCAGAAAAAGATCTTGATGGACACTCAAAAGCAAGAGATGGCCTCCGTGCGCAACTCTCTGCAGTCCATGCTGATGTGA

Function

GO: NA

KEGG:

id description
K19528 SYCP3; synaptonemal complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013880 True 648 mRNA 0.52 7 45976228 45978644

Neighbor

gene id symbol gene type direction distance location
AMCG00013881 NA coding upstream 74647 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 82333 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 90915 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 99333 45855452 ~ 45876895 (+)
AMCG00013871 LOC103358259 coding upstream 130092 45833821 ~ 45846136 (+)
AMCG00013884 NA coding downstream 14569 45993213 ~ 46005467 (+)
AMCG00013885 NA coding downstream 58749 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 125344 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 154982 46133626 ~ 46144604 (+)
AMCG00013892 NA coding downstream 171939 46150583 ~ 46155607 (+)
G47390 NA non-coding upstream 54330 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 69829 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 73043 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 121459 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 149576 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 317989 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 440488 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 951823 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 991094 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 996872 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 17034 45943571 ~ 45959194 (+)
G47398 NA other upstream 34322 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 153000 45816372 ~ 45823228 (+)
G47206 NA other upstream 615346 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 880559 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1058451 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1241275 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1773570 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2261056 48239700 ~ 48258433 (+)
G48018 NA other downstream 2290110 48268754 ~ 48269272 (+)

Expression


Co-expression Network