AMCG00013883


Basic Information

Item Value
gene id AMCG00013883
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45962190 ~ 45974311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013883
ATGTGGTGGTTCCAGCAGGGCCTGTGTGCCCTCCCGGTGGTGCTGGTGGTCTGGACTTCGGGCACCTTCATCCTCTCCTACGTCACCGCCGTGCTGCTCCACCATGTGGACCCCCTGGTTCCCTATATCAGTGACACGGGGACCGTTGTTCCAGAGAGATGTGTGTTTGGGATCATGCTCAACATTGCATCCTTTTTAGGTATTGCCACCATGTACGTGAGATACAAGCAGGTGGAAGCCCTCACTAGGAATGATGACAGCGTCCGCAGGTGGAACATGGCCGGCCTGGTGCTCGGGGTCATCAGCTGCTTCGGCATGTGCATCGGCTACACGGCCCACATCATCAGCACCATTTCGGAGTGGTCTCTGGCCTTCTCCTTCGTCTGCTTCTTCCTCACCTACATTCGGGATTTCCAGACAACACCGGGCCCTGAGGCCTGGAAGGCTGTGTGTGAGGCTCGCGTGAAGAGGCACTTCTGCACAGAGCCGCCTGGGGTTGTGCTGCTGCGAGTCCAAGGGCCCGTGCACCGGGGCGGGGGTGCAGGTGCTGTGGTTTGA
>TU59142
TTGGTCCGGCCTGGCGGGATGCGCAGCCGTGGtgttgtgcaggtgtgtgtggcACATTGGAGATTGACAAGTCCCTGAAGCTTCCTGATCACGGCAGCCCGTTGATCTACTGACCCcgtctctcccccaccccctggcCTGGCCCCCGCTGATACCTGGGGAGTCTCGCCTCGTCCCACACCTGGCCCATGCCCGTGTCTCTCTGCCAGTGTTGACGGTTTCCATCGGTGGGCATGTGGTGGTTCCAGCAGGGCCTGTGTGCCCTCCCGGTGGTGCTGGTGGTCTGGACTTCGGGCACCTTCATCCTCTCCTACGTCACCGCCGTGCTGCTCCACCATGTGGACCCCCTGGTTCCCTATATCAGTGACACGGGGACCGTTGTTCCAGAGAGATGTGTGTTTGGGATCATGCTCAACATTGCATCCTTTTTAGGTATTGCCACCATGTACGTGAGATACAAGCAGGTGGAAGCCCTCACTAGGAATGATGACAGCGTCCGCAGGTGGAACATGGCCGGCCTGGTGCTCGGGGTCATCAGCTGCTTCGGCATGTGCATCGTGGCCAACTTCCAGAAAACCAGCTTCATCGTCATGCACTGGGTGGGGTCGGTGCTGACCTTCGGAGTGGGAGCCATTTACATCCTGTGTCAGACGGTCCTGTCCTACAAGATGCAGCCCCACATTCACGGCAAGAAGATGTTCTGGGTGCGACTGTGGGTGGTGCTGTGGTGCGGCGTCAGCGTTGTGAGCATGTTCGTGTCCTCTGTGATCATGTACAGCAGCCTGCCAGGCATCGACGTGGCCAAGAAACTGCATTGGATCCCGGGCGAGACGGGCTACACGGCCCACATCATCAGCACCATTTCGGAGTGGTCTCTGGCCTTCTCCTTCGTCTGCTTCTTCCTCACCTACATTCGGGATTTCCAGAAAATCACACTTCGCGCGGAGGCCGTCCTGAGTGCCAGCCACCTGCACGACGCGACGCACTATAACGTCGATGTGT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013883 False 558 mRNA 0.59 6 45962190 45971610
TU59142 True 1002 TUCP 0.59 8 45963891 45974311

Neighbor

gene id symbol gene type direction distance location
AMCG00013876 LOC105900578,LOC105920322 coding downstream 102323 45857466 ~ 45859867 (-)
AMCG00013877 NA coding downstream 130749 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 145496 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 155857 45805431 ~ 45806333 (-)
AMCG00013865 NA coding downstream 177366 45783866 ~ 45784824 (-)
AMCG00013887 cept1,LOC105013905 coding upstream 4795 45979106 ~ 45991807 (-)
AMCG00013886 kctd20,LOC106572174 coding upstream 34793 46009104 ~ 46023024 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 54104 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 76282 46050593 ~ 46074428 (-)
AMCG00013891 NA coding upstream 112772 46087083 ~ 46087778 (-)
G47391 NA non-coding downstream 39276 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 107390 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 133939 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 135536 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 339435 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 257014 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 829300 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1083228 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1097032 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1251490 47225801 ~ 47227254 (-)
AMCG00013882 cry4,LOC108413014 other downstream 33881 45919636 ~ 45928309 (-)
G47261 NA other downstream 338295 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 618175 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2347611 43609282 ~ 43614579 (-)
G46742 NA other downstream 3261122 42699506 ~ 42701068 (-)
AMCG00013890 cacna1s other upstream 101118 46075429 ~ 46083542 (-)
G47501 NA other upstream 186228 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 324850 46299161 ~ 46311118 (-)
G47666 NA other upstream 897558 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1214284 47188595 ~ 47200897 (-)

Expression


Co-expression Network