AMCG00013884


Basic Information

Item Value
gene id AMCG00013884
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 45993213 ~ 46005467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013884
CGCGCCCGCACGCCCGAGCGTGCCCCTGACGTCATCACGTCGCCCGAGAGAAGGGGAAGCGCACGGACGGACGGTGCAGCTGAGGCCGATCTGGCGGAGGTAATCATGGCGATGACGGGTCAGACTTCCTGCTCCTCGATGAGTAACCACACGAAAGAGCGCGTGACCATGGCCAAGGTGACCCTGGAGAACTTCTACAGCAACCTCATTGCCCAGCACGAGGAGAGGGAGATGAGGCAGCAGAAACTAGAAAAGGTGATGGATGAAGAAGGACTAGCTGATGAGGagAAGCGTCTCAGGCGATCGCAGCACGCCCGCAAGGAGACCGAGTTCCTCCGACTCAAGAGGACCCGGCTGGGCCTGGACGACTTCGAGTCCCTGAAGGTCATAGGTCGTGGTGCTTTCGGAGAGGTGCGACTGGTGCAGAAGAAAGACACGGGTCACGTGTACGCGATGAAGATCTTGCGCAAGGCAGACATGCTGGAGAAGGAGCAGGTGGGGCACATCCGGGCCGAGAGGGATATTTTGGTGGAGGCGGACAGTCTCTGGGTGGTGAAGATGTTCTACAGCTTCCAGGACAAAATGAACCTGTACCTCATCATGGAGTTCCTGCCGGGGGGCGACATGATGACCCTGCTGATGAAGAAAGACACCCTGACGGAGGAGGAGACGCAGTTCTACATCGCCGAGACCGTGCTGGCCATTGACTCCATCCACCAGCTGGGCTTCATCCACCGGGACATCAAGCCGGACAACCTGCTCCTGGACAGCAAGGGCCACGTGAAGCTGTCAGACTTCGGGCTCTGCACAGGCCTGAAGAAAGCCCACCGGACCGAGTTCTACAGGAATCTCAACCACAGTCTCCCCAGCGACTTCACCTTCCAGAACATGAACTCCAAGAGGAAGGCCGAGACGTGGAAGAGAAACCGACGGCAGCTAGTAAGTGTCCGCCATTACCCTGCCTCCCAGAACCGCGCCGTGCCCTACAGCGGCTCGAGAAGGATCCTCAGCGTCTCATACCTCATAATGACTTGCTTCCACAAACTGTATTGCCTGCATCTTTACCAACCATTttcttccctccccctcccccccctcacCAAGGCGTTCTCAACTGTAGGGACCCCGGACTACATCGCCCCCGAGGTGTTCATGCAGACGGGATACAACAAGCTCTGCGACTGGTGGTCCCTCGGGGTAATCATGTACGAGATGCTGATCGgTTACCCTCCGTTCTGCTCTGAGACGCCGCAGGAGACCTACAAGAAGGTGATGAACTGGAGAGAGACACTGAGCTTCCCACCCGAGGTGCCCATCTCGGACAAGGCCAAGGTCCTCATCCTCCGATTCTGCTGTGAATGGGAGCGCAGGATTGGGGCGGCAGGCGTGGAAGATATCAAGAGCAACGCTTTCTTCGAGGGGGTGGACTACGATCACATCAGTGAGACGATGTCGGTTTTCTTCGCTCCGATAGTGAGCAACCACTCGGAGGCCGATTACAAGAACAAGGACTGGGTCTTCATCAACTACACCTACAAGCGCTTCGAGGGCCTCACGGCTAGAGGAGCCATCCCCTCCTACATGAAGGCGGGGAAGAGATAGATGCTGGGGCCCCGCACCCACCCCCCTTGGATTACAACACACTCTTGCACTTGCCTTATTCTCCTTGAACGTGTCGTTTTTTCAAAGGGCTTTCGAGGGGTCTGTCTCCGGCCCCCTTCTACATTCAGTGACTGAAGAGCTTTCCCATTCCAAACAGCCAGCtggagattttaatttttttacatttttttaaataacaaccaaaaacaaacacacggcCTTAATGTCAGAGTGCGGTCCAGTCACAGATGAGAACCAAGGCAGCTTCAATGttcaacacaaatataaatgctCAGACCAACTTGGGGACCAGGACAGCAGATCTGCCCCTGTCTTTCAGAAGGAAGAAGGCCTCCCTCAGGTCGATGGGAACTTCTCCGGCCCCCAGAATACTGTGGCCCTGGCAGTGGGGCCACACGGCACCAGCACAGACACCGGAGAGCCTCCCCTGCAGAGGGCTTTCTCTGTGGTCTTCTTTTCCTTCACAAACGATGCTGTAAGAAACCAGGTGGACGTCCAGCGGTCAGAACATGCTTCTTTGCTTTTCACCGAGGGCCAtcacctgctctgctctgctctagTGCTTTAAAAGCCGAGATGTGCGGGTCTCGATTGAATGTGCATGATCCTCCTCTGGTTCTGGTAATTAGGGCTTTGTTTTACCaggttttttaaatgctttattttctaaagGTTTTTTAAGTCATGTGTCCTTTTCAAAAAAATCTGTGTCAGTATTCCTTGTTCATAATGGTCcatttttttaccttttcttttgaCATATCGCTGCCTGCTGTTGGCACATGAAGTTTTAGACCGAGTCTACGGTGATTGTGTCTTACTGTTGTATTTTACCAAAGAAGtatgggaaatgtagtttgaTGTGATCTAAGTATTTTATCCTAGGTGGTACCGTCACTGTAGGGTGTAGAAATGCATGCTAGTACCAGAACAAGCATTAAACCACCATTGCCTTAAAAAGACCAGAGAATCACAATAACTCAAGATCCGGAGGGGTCGGAGTTCGTTTGTTGAAACTAAATGTTTCTTGATTTCCTTGTGAAAGGGAAATGGAATCCTTAAATCCTACTTCTGAGCTTTCAACGTTAAAAGAATAAGacgcttgtttttgttttgttttacaatccACAATTTGAAGGGCGTCTCCTTTCAGCCCGATCGCTTGTTTTGCTTTCCTGAGACGCATCACAAGTCGCCGTGCGAGATGGTGGTGATGAATTGGGTCCTTTGTACTAtgaatgggggtggggggttgtgaTACTGTCGCAATAGCATTACGAGAGTGTGTAGTAGTGTCTAGAGTGACCGATTTAGTGTTTTTTAGCTGGTGTGAACACGTCCTTGTATATTTCGTTTCTGTTAATTTATGAGAAAATGGTTATTCTTCACTTGGCTGCAGTGCTTCGGACCCATCGGTTTCTTGGGATGCGTTTCACTCCGGATCTTATGCAGTGTTGATTttaagagagacagacacagaccacAGGAATGCCACGACTGTCACactttgttttggtatttttttgtcGCAGATTGGGAAGCGGATGCCATAGTGTGCAACATTGTGACGCATCCacccacagagcagcacagcagaCCCACTGACCAAACGCGATGTTCGCTtgggacaaaaacaaataagcctGGGTCTGGGTCAACGCCAATGTATTTCAGTATTCCACAGGTAAAAATAACGAGCACTTTCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08790 STK38, NDR; serine/threonine kinase 38

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013884 True 3329 mRNA 0.51 14 45993213 46005467

Neighbor

gene id symbol gene type direction distance location
AMCG00013880 NA coding upstream 14569 45976228 ~ 45978644 (+)
AMCG00013881 NA coding upstream 91632 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 99318 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 107900 45878098 ~ 45885313 (+)
AMCG00013870 NA coding upstream 116318 45855452 ~ 45876895 (+)
AMCG00013885 NA coding downstream 31926 46037393 ~ 46047122 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 98521 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 128159 46133626 ~ 46144604 (+)
AMCG00013892 NA coding downstream 145116 46150583 ~ 46155607 (+)
AMCG00013896 NA coding downstream 150957 46156424 ~ 46160416 (+)
G47390 NA non-coding upstream 71315 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 86814 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 90028 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 138444 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 166561 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 291166 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 413665 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 925000 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 964271 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 970049 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 34019 45943571 ~ 45959194 (+)
G47398 NA other upstream 51307 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 169985 45816372 ~ 45823228 (+)
G47206 NA other upstream 632331 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 897544 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 1031628 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1214452 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1746747 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2234233 48239700 ~ 48258433 (+)
G48018 NA other downstream 2263287 48268754 ~ 48269272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019926 stk38b coding NC_007133.7 CM002906.2 883678 ~ 898645 (+)
grasscarp (Ctenopharyngodon idella) CI01156070_00000074_00001654 STK38, STK38B coding CI01156070 null 74 ~ 1654 (+)