AMCG00013885


Basic Information

Item Value
gene id AMCG00013885
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46037393 ~ 46047122 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013885
CCTCAGCTTGCCTTCCTCTTTCTCGTGTATCTGCAAGATGAACAGAGTGCTACTGACTGAGTGTGTTGCTCTTCTCtgaaacacacccacacactagAGCAGGACAATAAGCACTATCCCGGACAGACAGCTTTTTCTGATATTGTCCCAGTTGCATGCTGTGTGGACCTGGACTTTCTGACGAGTGAGGATGGACGACTCCTGGAATCGCATGAGCGTGTTCGATATGGTCTCCAAATTTGAGGTTTGCAGCAGGACTATGACTGATGGCGAGAGGTCTGTGCCTCCTGGGGAGATGGGaaggagggcagagaggctcaAGGAGGTGCCAGAACAGGCTAATGGCGACACGGGGCAAGAGCTGGAAGAACAAAGCCAGGGGGCAGCGGGCGGCCCTCATACCAAATGGAGGGGTCTGCATACTTTCCGCAGAGTCACCTCGAGGAAGCTAATCCAGAGGCCTTCTTCTCCCATCCTGAATGAAGAAGCCCaggcagagaaaaataaagcaagtcCATCCATTTGTCCGATTGACTGCACCCTGACCGACCTGCTCCTCCTTTCACAGGAGACCAACGAGGAAAAGATCTTCAAGATCGCCAACGAGCTCTTGGAGACGGAGAAGGCCTATGTCAGCCGACTGTATTTACTTGACCAGGTCTTTTTCAAGGAGCTTCTGACCGAAGCCAGGGCTGCGAGCTCGTTCCCCGAAGATGTCGTGAAGCAGATCTTCTCCAACCTCTCCTCTGTGTACCAGTTCCACAGCCTGTTTCTCCTGCCCGAGCTGCAGCGCCGCATGGATGAGTGGGGTACAAACCCCCGGATCGGAGACGTGCTACAGAAGGTGGCCCCATTCCTGAAGATGTACGGCGAGTACGTCAAGTGTTTCGACAAGGCCATGGACCTCATCAACACCTGGATGGAGAAGAGCCCCCGCTTTGATGAGATTGTCAAGGACATCCAGAAGCGGGAGATCTGTGGGAACCTGACCCTGCAGCACCACATGCTGGAGCCAGAGCGTCTGGAGAAGCTGTGGGAGGTGTACGAGATGCTGAGCATGGACGAAGAGATGGTGGACCCCTCCAACAAGCTGCTCCGAGAGGGACCCATCCAGAAGATCTCCGAGCGCAGGAAGAAGGAAAGACACCTCTTCTTGtttaaCAACATGCTGCTCTACTGTGTTCCCAAGTTCAGTCTGGTGGGGCCCAAGTACATCATCCGGTTACGCCTGGACATGGAAGGCATGAAGGTGAAGGAGCTGAACGATGTGGAGTTCCCCCACTCCTTCCTGATCTCGGGTACGTCTCGCACGCTGGAGCTGCAGGCCAGGTCTCAGGCAGACATGGAGACCTGGATTGAGGCTTGCCGGCAGGCGATCGACCAGAACGAGAAGAAGACAGAGAGTTTCAAGAGTGCCAGCAGCAGCCTGGTCCCTGACTTGCAGCCAGTCACGGTGGAGAGGCAGGAGCTGGGGAAACGAGCCCCCCAGTGGATCCGGGATGGTCTGGTGTCCATGTGCATGCGCTGCGGGGAGCCCTTCAACGCCATCATCCGGCGCAGACACCATTGCCGAGCCTGCGGATATGTCGTGTGCCACAAGTGCTCCGACTACAAGGCGGCCCTGCAGTACGATGAGAACAAGCTGAACCGCGTGTGCCGAGACTGCTACGGCATCCTGGGGGGGCAGATGGACAGCCGAGAGAAGGAGGACAAGAAGAGGGGCATACTGGAGAAAGAGGCTGGTGAGGTGTCTGAGCGCAGCCTGATGTGCAGCTTCCTGACCTTGATGGACAAGCAGGGGAAGGGTGGGACCAGGGGCTGGTTCGTCATCCCCAAAGACGAGCCTCTGGTCCTGTATATGTATGCAGCACCACAGgatgTAAGAGCTCAGACCACCATCCCATTGCTAGGATATCAGGTGAAGCAGTTGGCGGCCGATAACAAATGCACCTTCCAGCTCAGCCAATCCAAGCTAGTCTACACTTTTCTGGCCGAGTCGGAGGAGCAGAGAGACCGATGGGTGGAGGTTATCAATCAGGTGGCCAGTGGGGAGGAGCCCTGGCTGGAAGAAGACTGACTGACTTCCTGTTCAGTTACAGGAAGCTTGTTGGGAGTGACTGCTCACTAGACCAGATGGTGAATGCGTCTTTGTGGGCCATTGTTCATTGCTGACATTTATCTGTATCTATAAGGCAGAACTGTACATTTCCCTTGAGGACTGTAAAATGATTGTATATGATTGTAAGAGCAATtgatttatagttttatttgaaacaacCAATCTGCATTATAATCTTTCTTCGTGGCAATAAAGGGTGAAAGGAG

Function

GO: NA

KEGG:

id description
K05721 FGD2; FYVE, RhoGEF and PH domain containing 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013885 True 2325 mRNA 0.54 15 46037393 46047122

Neighbor

gene id symbol gene type direction distance location
AMCG00013884 NA coding upstream 31926 45993213 ~ 46005467 (+)
AMCG00013880 NA coding upstream 58749 45976228 ~ 45978644 (+)
AMCG00013881 NA coding upstream 135812 45895147 ~ 45901581 (+)
AMCG00013878 NA coding upstream 143498 45889295 ~ 45893895 (+)
AMCG00013868 NA coding upstream 152080 45878098 ~ 45885313 (+)
AMCG00013895 def6,LOC107757990,LOC107550223,LOC107700524 coding downstream 56866 46103988 ~ 46123681 (+)
AMCG00013894 ppard,LOC100136526,LOC107549971 coding downstream 86504 46133626 ~ 46144604 (+)
AMCG00013892 NA coding downstream 103461 46150583 ~ 46155607 (+)
AMCG00013896 NA coding downstream 109302 46156424 ~ 46160416 (+)
AMCG00013897 rpl10a,LOC105016832,LOC103141192 coding downstream 113506 46160628 ~ 46163499 (+)
G47390 NA non-coding upstream 115495 45921140 ~ 45921898 (+)
G47387 NA non-coding upstream 130994 45906102 ~ 45906399 (+)
G47383 NA non-coding upstream 134208 45901867 ~ 45903185 (+)
G47322 NA non-coding upstream 182624 45851095 ~ 45854769 (+)
G47336 NA non-coding upstream 210741 45826312 ~ 45826652 (+)
G47546 NA non-coding downstream 249511 46296633 ~ 46302869 (+)
G47580 NA non-coding downstream 372010 46419132 ~ 46470471 (+)
G47669 NA non-coding downstream 883345 46930467 ~ 46934777 (+)
G47681 NA non-coding downstream 922616 46969738 ~ 46971538 (+)
G47684 NA non-coding downstream 928394 46975516 ~ 46976186 (+)
AMCG00013879 dennd2d other upstream 78199 45943571 ~ 45959194 (+)
G47398 NA other upstream 95487 45934659 ~ 45941906 (+)
AMCG00013872 NA other upstream 214165 45816372 ~ 45823228 (+)
G47206 NA other upstream 676511 45326658 ~ 45360882 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other upstream 941724 45034772 ~ 45095669 (+)
AMCG00013919 LOC102792503,LOC106583503,LOC106565096 other downstream 989973 47037095 ~ 47073708 (+)
AMCG00013927 LOC108435245,LOC102295207,LOC101474852,LOC101474572,LOC102198786 other downstream 1172797 47219919 ~ 47227969 (+)
AMCG00013943 NA other downstream 1705092 47752214 ~ 47819723 (+)
AMCG00013961 NA other downstream 2192578 48239700 ~ 48258433 (+)
G48018 NA other downstream 2221632 48268754 ~ 48269272 (+)

Expression


Co-expression Network