AMCG00013886 (kctd20,LOC106572174)


Basic Information

Item Value
gene id AMCG00013886
gene name kctd20,LOC106572174
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46009104 ~ 46023024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013886
gactctTATTTTGGCAGGCGTCTCGAGGTGTGCGCTGCAGGGCAGGACTCGGATCCTCAGCCCCACGGaagccgccgccgccgccgccgccgcagTTCAGACTCGCAGCGCCGCTCGGAGGAGCTCCACACGGCGGACCTGCGGACGGAGCAGAGCGGCAACCATGCGCCCAGCGGCGGGGGAGCCATGAGCGACTCCCACATGAGCGGCATCGGCGCAGACCTTCCGGGGGGACCGACCCAGGGCGGGGGGGCGCGCGGCAGAGATGGGCAACGCGTGGAAGCGGGGGGTGCCGCCGAGATGACGGGCGCGTTGGGCACTGCCATGGCCGCCTCGGAGAGAGTGACGCTGGTGGTCGACAACACGTGCTTTGTGGTGGACCCGGGGGTCTTCACTGCCCACCCCGACACAATGCTGGGGAGGATGTTCGGGCCAGCCAGACAGAATAATTTCACCCGGCCCAATGAGAAAGGAGAGTACGAGATTGCCGAGGGCATCAGCGCCACCATCTTCCGGGTCGTTCTGGATTATTACCGGACGGGGGTCCTGCGCTGTCCGGACGGAGTCTCGGTGGCGGAGCTCCGCGACGCCTGTGACTATCTGTGCATCAACTTCGACTACAGCACCGTCAAGTGCCGCGACCTCAGCGCGCTGCTGCACGAGCTCTCCAACGACGGGGCGCGGCGGCAGTTTGAGGGCTtcctggaggagctggtgcTGCCCGCCATGGTGTCGAGCGCGCAGGGCGGCGAGAGGGAGTGCCACATCGTGGTGCTGACGGACGACGACACCGTGGACTGGGACCAGGAGAACCCGCCGCCCATGGGGGAAGAGTACTCACAGATTCTCTACAGCACCAAGCTGTACCGCTTTTTTAAGTACATCGAGAACCGGGACGTGGCCAAGGCGCTGCTGAAGGAGAGGGGTCTGAAGAACATCCGCATCGGCATCGAGGGGTACCCCACCTGCAAGGAGAAGGTGAAGCGGCGGCCGGGcgggaggtcagaggtcatctACAACTACGTGCAGCGGCCCTTCATTCAGCTGTcctgggagaaggaggagggcaAGAGCCGCCACGTGGACTTCCAGTGTGTGCGCAGCAAGAGCGTGCCCAACCTGGCGGCCGCGGGGGGCGAGGGGAGCCCCAGGACCCCCGCcgcccaccaccaccaccccccgcCCCAGGTGGACGAGCTGGACCGGCTCAACGGCCCCACCCTCCGCCTGTTCTCCTCGCAGACTCCCGACGAGGGCTGACGCAGCGCCACCGGACACCCCGCCTCGATCTCTTTCCCCCGCCCcacctccttccctctcccccaCCACCCTCACAGAGTCCCCCTCTGCCAGGCACGACTGGATGAAGCTGCCAAGGTGACGCCGAGCGAAGCGCCGCGGCTGTAGCATGCCAGGCTGTTCCCACTACGGCCTCCCAGCTGAGGAGTCTTTTCTAGATCAGCCGGATTGCTTTTTTGTGTTCGTTCGTCTTTGTTTTCCACAGAATCTCTTATTTTGGTTGTTACATTTCAACATGGATGTGCCAATGTGTGGCTCGGGTACCGGAAGTCTGTGCGGCAGGCGTCGGGGCCGGTCAGCCGGTCGGTCACCGTGCCGTCGTTAGGGCTGCTGCTCCTGTTCTAGACACGGGAGACACTGACCTCTACTGGTCGTCTTCGCTGCAGGAGTGTTTGAGCTCCAGAGttcaaattgtttgtttattattattccgttAACACGGACTGTGGACCAGCGCTCACCTCTGTGGCCACACTTGGGTCATTGCGCCTGCCCTCTCCACAGAGTCTGCAGGATGGGACCTccctccagagagagagacagtggaaCATGCAGGATTGGGGAATTAGGGGGCAGGGCGTTTGCGTtgggtgattttatttttcctttttaagctTTCCTGGTCCCACTGGGAGACAGAAAGCTGACACCAGTGCCTGCAGGAGCTGCATGTGAGCCGAGGTGAACGTACAACATGTATCTGTcatgcaaaaaacaaattgaatcacGGTTGTCTTAAGATACAATATCAACGGAGAGGAGAGGAGGTTTCGAGCTGGCTGCTTCCCGTGTAGGACGGAGACCAAGAGCTAGCGCACGTGATGCACACGGCATGCTTTTATACAGCGCCTTTCTTTGACTGCATCTCAAAGTGCTTGGACAACTGGTGGACAGCTTGCCAggctctcccccccaccccacgcCCACACTGGAGTGTCTTTGCCTGCAAAGCTGCTGGGACTCgagcatgctgggaaagtgaGCCAGACCTCCGAGCAGCGGTGTATCCAGCAGCGTTCTTCAGCCAGGAGGGAAGAGCACAGGGTCCGACAGCAGGCTCTACACATGCCTGGGCTTTTGTGTGTTGGTTCTTTTTGTATCCTTATCAGAATTCTGCATGGTGTCCCTCGCCTGTACAGCACGTCCCTGTAGAGCGCCAGGCGAGCCTCCGCGTCCCTCGTGCGCCGTGGCCAGACAGCACTATGCTCTGGGAGAGAAACCAAGCGTAGAGTAGCTGCCGACCGTTGGAAAATATGCAGCCGATCATGGCTTGTGACACGAGATGCCATTGGGGTTTGAAAAGGGACCAGCGATCTACAGCACTTTAGCACAGCCTGAATTGTGtaaaaatgcaatcattttgaatgttgatatttttatttctctgataATTACTACTACTTCTGGGAGTGCTGGAAagaagctgctgtttttttgttttgttgttattgttctcTGTGAGTATCTTGGCTTTATGTGGCTTTGTTAAGGGATTAAGGAATATTATTAGTCTTGGTTTGGGTGATTTTGGGGGGTTTGGAAGTGCACTGAATCTGgcatgatttgattttttttccttcgaTTTACCTCTAGAATTGTCAGGTGGATCTGAAGTCTTTCTAACGGAGGTGGATCTCCTTAATTCTAAGAGCATGCTGGTTGCTTTGGCATTTCGTCTTCAGCTGCATTTCCATCAGCAACAAGCAAACTCCTCCCCTCATAGATCAGTTCAGGTTATGCTGCTAAGTTTAATGACTCAAGAAGGATCTTTTCTGAAGCACAAATCTAAAGCTGGAATGACAAAATCCAAGCTTGTGTTCGGtcgttgtttttctcttgttaCAGTCTGTAAAAACCAAACCGCCAGTGAAGAGAGGTGTGTCAGTAGTTTTTGCACGTGAAGCCGTTACTGTATTCTCAGAGCATCACATTTTGGCCGATTGGTGGAGGAAGTGGAAGAACGGTCATCGATGTGGAGAAAATCACTgttaacaaaaagcaaaaaaaggaaTTTCATATACATATCAAAAGGAATGGGACAAGCCTGATGCTTTTACTGTTGTTACCATCAGTGTATCGTATATTTTCACCAGCCTCGTTATCGCGAGGCGCCTACAACCACCATCTTACAGAACTGGGAGCGCAACACGCTCCTCCCGGGTGAGTCATCCTTGACCCTAGAACACCTCCGGGAGTAACAGGAACAGTGAATGGAGGACGGAGCACTACAAATTTCCCAGCATTCCTCTGACCATCAATCGAAAGGGACCGCGGTAGGCATTGCGACCCAGGGGTGGTTCTGCAACTTGTTAAAATGATGCATAATGTCTTTACGTACACAGTATATGTATGTGACCATATCGGCAGGAGTAGGGctttgtaaaattataatttatgcaGATTGTCTGCTTTCGATATTGTTCTACAAATTGACATCCTACCAGTAAACTGAAGTATTGCGTGTCACGGTCACAGCCTTTGGCCTCTGGGAGCAGTTTGTAAAATCTCAAACTAATTGTGAAAAAAAGATGAAGGACATCAATTCAgaggttgtttttcttcttcattcaAGTGTTCGGCTTCAGTCGTTGACCTGTTGTGCGTCGATGAGAATCAGTTTTAGTCTATTTTTGCAAATTGAATGCACCCAGAACTTGTACAGATATAATGCCGATCTGCATCTGGTGTACATTTCATTCTGGAGATTAGTGTATGTTCCCATGGTGACAGGACCACCCTGAATGGTGTACATT

Function

symbol description
kctd20 Orthologous to human KCTD20 (potassium channel tetramerization domain containing 20).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013886 True 4052 mRNA 0.54 8 46009104 46023024

Neighbor

gene id symbol gene type direction distance location
AMCG00013887 cept1,LOC105013905 coding downstream 17297 45979106 ~ 45991807 (-)
AMCG00013876 LOC105900578,LOC105920322 coding downstream 149237 45857466 ~ 45859867 (-)
AMCG00013877 NA coding downstream 177663 45823117 ~ 45831441 (-)
AMCG00013874 rbbp5,LOC106583489 coding downstream 192410 45807005 ~ 45816694 (-)
AMCG00013875 NA coding downstream 202771 45805431 ~ 45806333 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding upstream 5391 46028415 ~ 46038881 (-)
AMCG00013888 NA coding upstream 27569 46050593 ~ 46074428 (-)
AMCG00013891 NA coding upstream 64059 46087083 ~ 46087778 (-)
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding upstream 71516 46094540 ~ 46102616 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 361658 46384682 ~ 46386241 (-)
G47391 NA non-coding downstream 86190 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 154304 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 180853 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 182450 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 386349 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 208301 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 780587 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 1034515 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 1048319 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1202777 47225801 ~ 47227254 (-)
AMCG00013883 NA other downstream 34793 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 80795 45919636 ~ 45928309 (-)
G47261 NA other downstream 385209 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 665089 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2394525 43609282 ~ 43614579 (-)
AMCG00013890 cacna1s other upstream 52405 46075429 ~ 46083542 (-)
G47501 NA other upstream 137515 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 276137 46299161 ~ 46311118 (-)
G47666 NA other upstream 848845 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1165571 47188595 ~ 47200897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020682 KCTD20 coding NC_007133.7 CM002906.2 898131 ~ 910926 (-)