AMCG00013890 (cacna1s)


Basic Information

Item Value
gene id AMCG00013890
gene name cacna1s
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46075429 ~ 46083542 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013890
ATGGAGGCCAACGCAGTGGGGGCGGCTTCCATCATCATGGACAGCGAGACCCTGCGGAGGAAGCAGAAGGAGAAGCTGAAGAAACTGCAGGCCACTGGTGGGAACCCGCGGCCGGCACGCTCGCTGTGCTGCCTGACGCTGACCAACCCCTTTCGCAAAGCCTGCATCAGCATCGTGGAGTGGAAGCCGTTCGAGATCATTATCCTGTTGACCATCTTCGCCAACTGCGTGGCGCTTGCCGTGTTCCTGCCCATGCCTGAAGACGACACCAACTCGACCAACTCCAGCCTGGAGAAAGTGGAATACATCTTCCTGATTGTCTTCACCATCGAGGCGTCTCTCAAGATAGTGGCGTATGGGTTTTTATTCCATCCGGATGCGTATTTGCGGAACTGCTGGAATATACTGGACTTTGTGATCGTATTTGTTGGGCTCTTCACTGTGGCCCTGGAGACCATCAACCGCATTGAGGGGATCGAGACGCCGGTCGGGGGGAAGGGGGCCGGCTTCGACGTGAAGGCCCTCCGAGCATTCCGAGTCCTGAGGCCGCTACGCCTCGTCTCCGGCGTCCCCAGCCTGCAGGTGGTGCTCAACTCCATCATTAAGGCCATGGTGCCACTGCTGCACATCGCCCTGCTGGTCCTCTTCATGATAATCATCTACGCCATCATCGGCTTGGAGCTCTTCAAGTGCAAGATGCACAAGACCTGCTACTACAGTGGCACACGTCAGTGA
>TU59204
gagagaggaataggGAGAGCGGGCGGAGGGGGGGAGCGTGTGAGCTTGTGCTGGTCCCGGGAAAGGAGGCAACAAAAAGATAGAAGACAGAACAACAAGAAGAGTACCGGGGGGTGTTCATCCAGAGGAATACAGCAACGGGATTATCATTTTTTTGGGATCGTTGGGTTTGTTTAACTTCCCTCCCCGTCTATTTAGTCTCGGGTCTGCTTTCGCGGGACAGCCAGCATGGAGGCCAACGCAGTGGGGGCGGCTTCCATCATCATGGACAGCGAGACCCTGCGGAGGAAGCAGAAGGAGAAGCTGAAGAAACTGCAGGCCACTGGTGGGAACCCGCGGCCGGCACGCTCGCTGTGCTGCCTGACGCTGACCAACCCCTTTCGCAAAGCCTGCATCAGCATCGTGGAGTGGAAGCCGTTCGAGATCATTATCCTGTTGACCATCTTCGCCAACTGCGTGGCGCTTGCCGTGTTCCTGCCCATGCCTGAAGACGACACCAACTCGACCAACTCCAGCCTGGAGAAAGTGGAATACATCTTCCTGATTGTCTTCACCATCGAGGCGTCTCTCAAGATAGTGGCGTATGGGTTTTTATTCCATCCGGATGCGTATTTGCGGAACTGCTGGAATATACTGGACTTTGTGATCGTATTTGTTGGGCTCTTCACTGTGGCCCTGGAGACCATCAACCGCATTGAGGGGATCGAGACGCCGGTCGGGGGGAAGGGGGCCGGCTTCGACGTGAAGGCCCTCCGAGCATTCCGAGTCCTGAGGCCGCTACGCCTCGTCTCCGGCGTCCCCAGCCTGCAGGTGGTGCTCAACTCCATCATTAAGGCCATGGTGCCACTGCTGCACATCGCCCTGCTGGTCCTCTTCATGATAATCATCTACGCCATCATCGGCTTGGAGCTCTTCAAGTGCAAGATGCACAAGACCTGCTACTACAGTGGCACACGCATCGTGGCAAGTGTGGAGAACGAGAAACCAGCGCCCTGTGCGTTGGGCGGCCATGGCC

Function

symbol description
cacna1s Enables high voltage-gated calcium channel activity. Involved in calcium ion transport and muscle contraction. Located in I band and T-tubule. Part of voltage-gated calcium channel complex. Implicated in hypokalemic periodic paralysis and malignant hyperthermia.

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013890 False 735 mRNA 0.57 5 46075764 46083314
TU59204 True 1015 TUCP 0.57 6 46075429 46083542

Neighbor

gene id symbol gene type direction distance location
AMCG00013888 NA coding downstream 1001 46050593 ~ 46074428 (-)
AMCG00013889 mtch1,LOC106572175,LOC106566941 coding downstream 36548 46028415 ~ 46038881 (-)
AMCG00013886 kctd20,LOC106572174 coding downstream 52405 46009104 ~ 46023024 (-)
AMCG00013887 cept1,LOC105013905 coding downstream 83622 45979106 ~ 45991807 (-)
AMCG00013876 LOC105900578,LOC105920322 coding downstream 215562 45857466 ~ 45859867 (-)
AMCG00013891 NA coding upstream 3541 46087083 ~ 46087778 (-)
AMCG00013898 tmem9,LOC107679355,LOC107711977,LOC106572715 coding upstream 10998 46094540 ~ 46102616 (-)
AMCG00013905 dyrk3,zgc:172180,LOC107728622 coding upstream 301140 46384682 ~ 46386241 (-)
AMCG00013908 NA coding upstream 304612 46388154 ~ 46389618 (-)
AMCG00013907 NA coding upstream 321282 46404824 ~ 46406931 (-)
G47391 NA non-coding downstream 152515 45921106 ~ 45922914 (-)
G47365 NA non-coding downstream 220629 45845849 ~ 45854800 (-)
G47359 NA non-coding downstream 247178 45827965 ~ 45828251 (-)
G47358 NA non-coding downstream 248775 45825723 ~ 45826654 (-)
G47259 NA non-coding downstream 452674 45622515 ~ 45622755 (-)
G47538 NA non-coding upstream 147783 46231325 ~ 46238514 (-)
G47661 NA non-coding upstream 720069 46803611 ~ 46838764 (-)
G47718 NA non-coding upstream 973997 47057539 ~ 47120601 (-)
G47717 NA non-coding upstream 987801 47071343 ~ 47075028 (-)
G47766 NA non-coding upstream 1142259 47225801 ~ 47227254 (-)
AMCG00013883 NA other downstream 101118 45962190 ~ 45974311 (-)
AMCG00013882 cry4,LOC108413014 other downstream 147120 45919636 ~ 45928309 (-)
G47261 NA other downstream 451534 45623238 ~ 45623895 (-)
AMCG00013846 NA other downstream 731414 45338859 ~ 45344015 (-)
AMCG00013820 tmem167b other downstream 2460850 43609282 ~ 43614579 (-)
G47501 NA other upstream 76997 46160539 ~ 46163487 (-)
AMCG00013903 NA other upstream 215619 46299161 ~ 46311118 (-)
G47666 NA other upstream 788327 46871869 ~ 46875370 (-)
AMCG00013932 ruxe,snrpe other upstream 1105053 47188595 ~ 47200897 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other upstream 1781308 47864850 ~ 47868863 (-)

Expression


Co-expression Network